Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1668 ATGCGTAGCTGCGGCTTCGCTTTATCAGGCACCGATTCACGTTGCTATTTTCCGGCGATGCCTCCGATTTTCTCTCCAAGAAGAGCCTCAAATTCCCAGGTTTCCTTCCTTAAATCGCCACGACCTCCTTCTGCTTGCGTCAGAGTAAAGGCCGCTTTCATTAACGACGCGGTAGTCTCCGACGCCGTTGAGGTGAGCTTCTATGAGCTTCTAGGAGTACCGGAGTCCGGATCGATGCTGGAGATTAAGCAGGCTTACAAGCAGATGGCTCTCAAATATCATCCGGACGTTTCACCCCCGGGCCGGATCGAGGAGTATACTAGGAAGTTCATCAAACTTCAGGAGGCGTATGAGACGTTGTCCGATCCTAACATGAGAGCTTTGTATGATAGAGACTTGGCCAGAGGTCTTCACTTTGCTTTCTCTGCTCGAAAACGCTGCTACAACCATGAGGAAATGGAAGAGAAAAGTGGGTGGAGGAACCGTTGGCAGGATCAGCTATCAGGATTGAAGAGAAGAAGCATGAACAGAGATTCAAAAGCAAACATGTCGTGGGGAGCCCGAATGCGCAGGGAAAGGGACGAGCTTCACAAGGAGGATGCCTAA 606 50.5 MRSCGFALSGTDSRCYFPAMPPIFSPRRASNSQVSFLKSPRPPSACVRVKAAFINDAVVSDAVEVSFYELLGVPESGSMLEIKQAYKQMALKYHPDVSPPGRIEEYTRKFIKLQEAYETLSDPNMRALYDRDLARGLHFAFSARKRCYNHEEMEEKSGWRNRWQDQLSGLKRRSMNRDSKANMSWGARMRRERDELHKEDA 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15930873 15933448 + PI0006234.1 Cmetu05g1668 357372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1668 201 SMART dnaj_3 65 125 IPR001623 -
Cmetu05g1668 201 SUPERFAMILY Chaperone J-domain 65 138 IPR036869 -
Cmetu05g1668 201 FunFam Chaperone protein dnaJ 20, chloroplastic 52 161 - -
Cmetu05g1668 201 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Cmetu05g1668 201 Gene3D DnaJ domain 63 185 IPR036869 -
Cmetu05g1668 201 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cmetu05g1668 201 PRINTS DnaJ domain signature 105 125 IPR001623 -
Cmetu05g1668 201 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cmetu05g1668 201 MobiDBLite consensus disorder prediction 170 201 - -
Cmetu05g1668 201 CDD DnaJ 67 122 IPR001623 -
Cmetu05g1668 201 Pfam DnaJ domain 67 130 IPR001623 -
Cmetu05g1668 201 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 49 195 - -
Cmetu05g1668 201 MobiDBLite consensus disorder prediction 171 201 - -
Cmetu05g1668 201 ProSiteProfiles dnaJ domain profile. 66 133 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1668 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1668 Cmetu-Chr5:15930873 Cmetu06g2051 Cmetu-Chr6:2473068 5.90E-55 dispersed
Cmetu05g1668 Cmetu-Chr5:15930873 Cmetu11g1637 Cmetu-Chr11:28407643 5.60E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g931 . . . . . . . . . Cmo17g00091 . Cma14g01907 Car06g01052 Car14g01708 Sed02g1527 Cpe08g00413 Cpe03g01608 Bhi01g00197 Tan10g0493 Cmetu06g2051 Lac12g2015 Hepe05g1777 . Lcy11g1792 . . . . . . . Cone14ag0245 Cone15ag0262 Cone7ag0410 . Lsi05g01860 . . Cme06g00366 . . Bda11g00324 Bda13g00476 . Bpe13g00869 Bma02g01194 Bma06g01272 Sed09g0169 Cmo06g01237 Cmo14g01962 . Cma17g00085 . Car17g00080 Cpe12g00078 . Bhi12g01476 Tan06g2282 Cmetu05g1668 . Hepe03g0378 . . Cla05g00330 Cam05g0360 Cec05g0364 Cco05g0366 Clacu05g0357 Cmu05g0342 Cre05g0405 Lsi09g01122 Csa03g01076 Chy06g00346 Cme05g00736