Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1710 ATGGGGTATATTGGTGCACATGGGGTTGCAACACTGCACAGATACAAGTACAGTGGTGTGGATCACTCTTATGTTGCCAAATATGTGCTGCAACCCTTTTGGAGTCGCTTCGTCAATTTCTTTCCACTATGGATGCCTCCAACTATGATAACACTTATGGGATTTATGTTTTTGGTCACATTAGCAGTTCTTGGTTATGTATATTCTCCTCATTTGGACTCCGCTCCCCCAAGGTGGGTTCATTTTGCGCATGGATTGCTTCTATTTCTTTATCAGACTTTTGATGCGGTTGATGGGAAGCAAGCACGGAGGACAAATTCCTCAAGTCCACTGGGAGAACTTTTTGACCACGTTTGA 357 43.7 MGYIGAHGVATLHRYKYSGVDHSYVAKYVLQPFWSRFVNFFPLWMPPTMITLMGFMFLVTLAVLGYVYSPHLDSAPPRWVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHV 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6799401 6800831 - PI0028574.1 Cmetu05g1710 357414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1710 118 Gene3D - 22 118 IPR043130 -
Cmetu05g1710 118 Pfam CDP-alcohol phosphatidyltransferase 46 117 IPR000462 GO:0008654|GO:0016020|GO:0016780
Cmetu05g1710 118 PANTHER ETHANOLAMINEPHOSPHOTRANSFERASE 2 117 IPR014472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1710 K00993 - - csv:101205809 244.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1710 Cmetu-Chr5:6799401 Cmetu12g1648 Cmetu-Chr12:21778632 2.60E-63 dispersed
Cmetu05g1710 Cmetu-Chr5:6799401 Cmetu09g1695 Cmetu-Chr9:8829520 8.20E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g174 . . . . . . . . . . . . Car04g01610 . Sed06g1836 . Cpe01g01385 Bhi07g01403 Tan04g0931 Cmetu05g1710 . . . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 . . . . . . . . . . . . . . . . . . . . . . . . Cpe04g01421 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000843 2 13 2 2 2 2 4 2 2 2 3 2 3 2 8 3 2 2 2 2 3 2 3 3 3 1 2 6 4 1 90