Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1829 ATGTCAAGCTGCATCAGTAGTGCTCAAGAACAACTCTGTTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAATATGGCTGCTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCATAGCCACAGTGGGAGTGGAGGTGATCACTATAGAATGAAAATGAGAGCTCCAATTAAGAACCCTACAAATGATCATGATCAAAGGCTCCTTAATCGAGCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAAAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCCTTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGTCAGGGCTGCACTATTGA 543 43.28 MSSCISSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGGDHYRMKMRAPIKNPTNDHDQRLLNRAPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVSGLHY 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1310328 1313934 - PI0007205.1 Cmetu05g1829 357533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1829 180 CDD HMG-box_SF 108 144 - -
Cmetu05g1829 180 SUPERFAMILY HMG-box 99 147 IPR036910 -
Cmetu05g1829 180 Gene3D High mobility group box domain 88 149 IPR036910 -
Cmetu05g1829 180 PANTHER PROTEIN YABBY 6-RELATED 1 164 IPR006780 GO:0007275
Cmetu05g1829 180 Pfam YABBY protein 8 154 IPR006780 GO:0007275
Cmetu05g1829 180 FunFam axial regulator YABBY 5-like 92 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1829 K25796 - - csv:101219877 352.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1829 Cmetu-Chr5:1310328 Cmetu09g0297 Cmetu-Chr9:2927555 2.40E-39 dispersed
Cmetu05g1548 Cmetu-Chr5:21541883 Cmetu05g1829 Cmetu-Chr5:1310328 5.80E-33 transposed
Cmetu10g1095 Cmetu-Chr10:19750794 Cmetu05g1829 Cmetu-Chr5:1310328 2.60E-30 transposed
Cmetu02g0863 Cmetu-Chr2:19165403 Cmetu05g1829 Cmetu-Chr5:1310328 5.40E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1095 . 3 172 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 1.5e-44 176.4
Cmetu09g0297 . 88 248 C2C2-YABBY Transcription Factor Family AT2G45190 59.2 6.2e-42 167.5
Cmetu05g1548 . 1 142 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 3.3e-44 175.3
Cmetu02g0863 . 6 170 C2C2-YABBY Transcription Factor Family AT1G08465 55.9 1.3e-43 173.3
Cmetu09g0297 . 44 238 C2C2-YABBY Transcription Factor Family AT1G08465 52.3 1.6e-43 172.9
Cmetu06g2212 . 21 185 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 1.6e-38 156.4
Cmetu09g0297 . 55 247 C2C2-YABBY Transcription Factor Family AT4G00180 55.7 1.0e-49 193.7
Cmetu10g0308 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 55.7 4.4e-42 168.7
Cmetu02g0863 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 68.0 2.5e-59 225.3
Cmetu05g1829 . 8 159 C2C2-YABBY Transcription Factor Family AT2G26580 72.3 4.2e-59 224.6
Cmetu09g0297 . 46 209 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 1.7e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7977 PF04690 YABBY 6.00E-64 CL0114 Cmetu TF