Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1832 ATGGCGCATCGGTTGCTAAGGGATCTGGAAGCTGATGGGTGGGAGCGCTCTGATTTCCCCATCATCTGCGAGTCTTGCCTAGGCGATAACCCCTACGTCCGCATGACGAAAGCTGATTATGATAAAGAATGCAAAATTTGCACACGCCCATTTACAGTGTTCAGGTGGAGGCCTGGACGTGATGCTAGATATAAGAAAACAGAGATTTGTCAGACATGTAGTAAGTTAAAAAACGTATGTCAAGTTTGCCTTTTGGATCTTGAATATGGTTTACCAGTTCAAGTTCGAGACACTGCACTGTCTATCAACTCCAATGATGCTATTCCCAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGAAAGGCTAGAGCTGGTATTGATTATGAGTCCTCATATGGAAAGGCACGGCCAAACGATACTATTTTGAAGCTTCAACGAACCACACCATACTACAAGAGGAATCGGGCACATGTTTGTAGTTTCTATATTAGGGGTGAATGCACTAGAGGTTCTGAATGCCCTTATCGACACGAGATGCCTGAAACTGGAGAGTTGTCCCAACAAAATATCAAGGATCGTTATTATGGGGTTAACGATCCGGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAGATGCCTTCCCTGGAACCTCCAGAAGATGAGAGTATTAGAACCTTGTATGTGGGTGGACTTGATGCTCGAGTCAGCGAGCAAGATCTTCGAGATAACTTTTACGCTCATGGCGAAATTGAATCTATCAGAATGGTGCTACAACGTGCATGCGCTTTTGTAACCTACACCACCAGAGAAGGTGCAGAAAAGGCTGCAGAAGAGCTTTCTAACAAGCTGGTAGTTAGGGGCCTTAGGTTGAAATTGATGTGGGGCAGACCTCAAGCACCAAAAGCCGAGATGGAAGGTTCTGATGAAGCGAAACAAGCTGCAGTAGCTCACAGCGGAATGTTGCCACGAGCAGTTATCTCGCAGCAGCACAACCAATTACATCCTCCAGGAACCCATGACCAACCTCAAGCTATGCACTACTTCAATATTCCACCGCCACCGCCTCAACAGGAGAGAGCATTCTACCCATCAATGGACCCCCAAAGAATGGGAGCTCTGGTTTCGACTCACGATGCAGGGGTGCCCCCTAATGGACCTACAGGTTCAACCGAAACTAGACCCGGTTCTGAGAAACAACACCAACACCAACAGGGACATCAATTTCCCTATCACCCAATGCACCCACCACCACCTGCACAATATCAACAGCAATTTTATCCACCGCCGTATGGGTACGTACAACATTATCCACCATACCCTCCTTATCATTCGGGGATGCCACCACCACCGCAGTCCCAACCCCAGCCCCATCCTCCTTCAGGTTCCCAGCAATATCAGCAGCAGCATTCTGCACCACCAGGCTCAGCCCCTCAGTCCCACGGAGGAGCATCTTCCGGTTCAGCACCGCCGGGATCAACACCTTCAGCGTCTGCTCCATCTTCAACATCTGCTGAACCTGCATCATCGTAG 1542 48.51 MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVSEQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVVRGLRLKLMWGRPQAPKAEMEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQQERAFYPSMDPQRMGALVSTHDAGVPPNGPTGSTETRPGSEKQHQHQQGHQFPYHPMHPPPPAQYQQQFYPPPYGYVQHYPPYPPYHSGMPPPPQSQPQPHPPSGSQQYQQQHSAPPGSAPQSHGGASSGSAPPGSTPSASAPSSTSAEPASS 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4474276 4480107 - PI0027414.1 Cmetu05g1832 357536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1832 513 Gene3D - 149 211 - -
Cmetu05g1832 513 Gene3D - 212 310 IPR012677 -
Cmetu05g1832 513 MobiDBLite consensus disorder prediction 435 461 - -
Cmetu05g1832 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 287 IPR000504 GO:0003723
Cmetu05g1832 513 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 389 IPR039171 GO:0003723
Cmetu05g1832 513 SMART rrm1_1 229 297 IPR000504 GO:0003723
Cmetu05g1832 513 Pfam Torus domain 137 194 IPR032297 -
Cmetu05g1832 513 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Cmetu05g1832 513 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Cmetu05g1832 513 MobiDBLite consensus disorder prediction 334 366 - -
Cmetu05g1832 513 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Cmetu05g1832 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Cmetu05g1832 513 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Cmetu05g1832 513 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Cmetu05g1832 513 MobiDBLite consensus disorder prediction 378 513 - -
Cmetu05g1832 513 CDD RRM_RBM22 227 300 - -
Cmetu05g1832 513 MobiDBLite consensus disorder prediction 414 428 - -
Cmetu05g1832 513 SUPERFAMILY RNA-binding domain, RBD 213 304 IPR035979 GO:0003676
Cmetu05g1832 513 MobiDBLite consensus disorder prediction 462 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1832 K12872 - - csv:101217519 843.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1832 Cmetu-Chr5:4474276 Cmetu11g2597 Cmetu-Chr11:26720115 1.60E-08 dispersed
Cmetu05g1832 Cmetu-Chr5:4474276 Cmetu07g1732 Cmetu-Chr7:22326174 1.30E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006841 1 1 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 0 1 1 0 1 36