Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1906 ATGGAACTCAGAAAGTACAAACCCGATCTTCTTTCTCCCGCCTTCCTCCTCCTCATCTTCTTCATTTCCATCTCCGGCCGATCCGCCGTTCACGCCTACAAAAACCACACCGTCGGCGATTCTCTCGGCTGGTTCGACAAATTGGAGAAACCTGGCGTCGATTACCAGGAATGGACCGACGGTAAAACCTTCGACCTTGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCGGTTGTACAAACATACAATTTCACCACATACAAACTTTGTGACTACGACGACGCATCAGAAAACGACACAACGGAATGGTCCGCCGCCGATCCGTCAGCAACCACTCCCTACGCCGTGACGGTGGCTGTCCCATTGCTTAAAGAAGGCGCCAACTATTTCTTCTCTGGCAACTACGACGGAGAGCAGTGCCAAAATGGACAACAATTCAAAATAAACGTCACTCATGGACAGGGCCTCCCTAAAAGCATGAGAGATCCTTCCGACGAAGCTCCGGCTCCGGTAGTTCCCGACACCGGCGATCAAACCGAATCTGCACCCGACACCATTGTCCCTTCCAGCTTTGACAATCCTCGAAACGATGTCGCTGATAACGATAAGGAATCTTCGGGCTCCAATTCGCTATCGCTTATTTGCTTCAAGTTTAATGAGTTCTTCTTCTTGTTAGTTGGTATTGCCTCTGCCTGTTTTTTTTCTTTGTACTGA 720 48.61 MELRKYKPDLLSPAFLLLIFFISISGRSAVHAYKNHTVGDSLGWFDKLEKPGVDYQEWTDGKTFDLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDDASENDTTEWSAADPSATTPYAVTVAVPLLKEGANYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMRDPSDEAPAPVVPDTGDQTESAPDTIVPSSFDNPRNDVADNDKESSGSNSLSLICFKFNEFFFLLVGIASACFFSLY 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21643307 21647823 + PI0012601.1 Cmetu05g1906 357610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1906 239 Gene3D - 33 157 IPR008972 -
Cmetu05g1906 239 FunFam Early nodulin-like protein 18 33 155 - -
Cmetu05g1906 239 PANTHER BLUE COPPER PROTEIN 33 171 IPR039391 GO:0009055
Cmetu05g1906 239 CDD Phytocyanin 34 152 - -
Cmetu05g1906 239 MobiDBLite consensus disorder prediction 155 211 - -
Cmetu05g1906 239 MobiDBLite consensus disorder prediction 180 197 - -
Cmetu05g1906 239 ProSiteProfiles Phytocyanin domain profile. 34 154 IPR003245 GO:0009055
Cmetu05g1906 239 Pfam Plastocyanin-like domain 44 146 IPR003245 GO:0009055
Cmetu05g1906 239 SUPERFAMILY Cupredoxins 34 152 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1906 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1906 Cmetu-Chr5:21643307 Cmetu11g0809 Cmetu-Chr11:241227 2.20E-32 dispersed
Cmetu05g1906 Cmetu-Chr5:21643307 Cmetu03g1497 Cmetu-Chr3:2627581 3.60E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1793 . 24 166 Phytocyanin Superfamily AT1G48940 52.4 1.1e-36 150.2
Cmetu03g1063 . 15 169 Phytocyanin Superfamily AT2G25060 55.1 5.0e-45 177.9
Cmetu04g1271 . 13 179 Phytocyanin Superfamily AT5G15350 54.2 4.9e-50 194.5
Cmetu03g1063 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 1.3e-45 179.9
Cmetu12g1793 . 24 166 Phytocyanin Superfamily AT1G48940 52.4 1.1e-36 150.2
Cmetu03g1063 . 9 170 Phytocyanin Superfamily AT5G25090 52.7 2.5e-39 159.1
Cmetu03g1063 . 15 169 Phytocyanin Superfamily AT2G25060 55.1 5.0e-45 177.9
Cmetu03g1063 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 1.3e-45 179.9
Cmetu04g1271 . 13 179 Phytocyanin Superfamily AT5G15350 54.2 4.9e-50 194.5
Cmetu05g1906 . 29 224 Phytocyanin Superfamily AT1G08500 59.6 2.3e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26