Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1911 ATGGATCAGTTACTGGAGATTTTCGTGCCCGAAATTCCGACGGCTTCAACTCCGCTAATTCCTCCACCGGAAACGGCCCATTCCAATCCCGGCGAGGTTGTGATATTTCGTTGTCCGATTAACACTGAAGCTATGGAGGAAGAAGATGAGGCCTTGTTTCAAAACGACGGCGTTTTGGATACAATAGAGGAGAACAAGCCTCTCTCTAACCTACATAGCGGGAACATGCGGAGGCGATGCCTAGATTTCGAAATGGCGGGAAAACCCAATACGGCGCCGGCGGCGACGGTGGAGGCGAGGACCGGCGACGCTTCAATCCCCAGTTCTTCTTCTTCTTCGTCATTGCGACGCACTCTGCCTGGTATCGGTTTGCACTTGAATGCTCTTGCAGCGACTTTGAAGCACTCCGATTCAGAAAATCTGTGTTCCGATAGCCAGCCGAGTCTTCCCAGCTCCTCTGCTCCCATTTTTGCCTCAAATTCCACTCGAGATCAACCCTTGTTGGCTTCATCCACTCCTGAGAGTGAAAACCCTCCTCAAGAATCTGCGAATCTGACTGAAGAAGAACTCAATCAGATCAACCCTAAAAAGAATTGGAAATTGATGGAAAATGCTGGAATTGGGGCGTGTAAACGTTGTAACTGTAAGAAATCAAGGTGCCTGAAGCTATATTGTGAGTGCTTTGCTGCTGGCGTGTACTGCATTGAACCGTGTTCATGTCAAGACTGCTTCAACAAACCGATACATGAAGCGATGGTTCTTGAGACTCGCAGGCAGATTGAATCTCGCAATCCACTTGCATTTGCACCTAAAGTGATCATGAACTGTGATTCGGTTTCTGAACTTGGGGATGATTCAAACAAAACTCCCGCTTCTGCACGACATAAACGAGGGTGCAACTGTAAAAAATCAGGTTGCTTGAAAAAATACTGCGAATGTTATCAGGGCGGCGTTGGATGCTCCATCAACTGCAGATGTGAAGGTTGTAAAAACGCATTTGGGAGGAAAGATGAATCGGCTCTAATAGGAAGTGAAATCGAACAAGAGGAAGAAGGCAGAGAACATTGCCAAAAAACCATAGATGTTCAGAGCGATGAAGATCAGCAGAACCCAAGCAATGCTGCTCCCTCGACACCACTAGGTCCATGCAGATCATTGATTCCATTTCCATTCCAACTGAAGAGGAGACTTCCATCTTTCCTCAACGACGAGTCGTCCTCTAGATTGAGCGTTCGATTCAAACTCGAGAAGCACGGCATCACTCAAACAGAGCCCAAGTTTGAGAAAACACCCTGTGAGGATGTGATGCCAGAAACACTTTGTAATGGTTGCCCTTCTATCACAGGTGTTAAGAGTGTTTCTCCCAACAGTAAGAGGGTTACTCTACCCCCACCACAGGGTGATTTCAGGCCGCTGCCCTCGACTAGAATCGGTCGGAAACTGATACTGCAGTCCATACCCTCTTTCCCTTCTCTCACTAATCAAAACTCAAGAATAAATGGACCGAGTGAACTGTAA 1518 47.3 MDQLLEIFVPEIPTASTPLIPPPETAHSNPGEVVIFRCPINTEAMEEEDEALFQNDGVLDTIEENKPLSNLHSGNMRRRCLDFEMAGKPNTAPAATVEARTGDASIPSSSSSSSLRRTLPGIGLHLNALAATLKHSDSENLCSDSQPSLPSSSAPIFASNSTRDQPLLASSTPESENPPQESANLTEEELNQINPKKNWKLMENAGIGACKRCNCKKSRCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEAMVLETRRQIESRNPLAFAPKVIMNCDSVSELGDDSNKTPASARHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDESALIGSEIEQEEEGREHCQKTIDVQSDEDQQNPSNAAPSTPLGPCRSLIPFPFQLKRRLPSFLNDESSSRLSVRFKLEKHGITQTEPKFEKTPCEDVMPETLCNGCPSITGVKSVSPNSKRVTLPPPQGDFRPLPSTRIGRKLILQSIPSFPSLTNQNSRINGPSEL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19251102 19257496 + PI0007328.1 Cmetu05g1911 357615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1911 505 SMART CXC_2 208 249 IPR033467 -
Cmetu05g1911 505 SMART CXC_2 294 335 IPR033467 -
Cmetu05g1911 505 MobiDBLite consensus disorder prediction 91 117 - -
Cmetu05g1911 505 MobiDBLite consensus disorder prediction 453 473 - -
Cmetu05g1911 505 ProSiteProfiles CRC domain profile. 209 334 IPR005172 -
Cmetu05g1911 505 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 60 494 IPR044522 GO:0003700
Cmetu05g1911 505 MobiDBLite consensus disorder prediction 102 117 - -
Cmetu05g1911 505 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 211 246 IPR005172 -
Cmetu05g1911 505 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 296 332 IPR005172 -
Cmetu05g1911 505 MobiDBLite consensus disorder prediction 164 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1911 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1366 Cmetu-Chr2:14854523 Cmetu05g1911 Cmetu-Chr5:19251102 2.00E-26 dispersed
Cmetu05g1534 Cmetu-Chr5:728479 Cmetu05g1911 Cmetu-Chr5:19251102 1.00E-27 dispersed
Cmetu05g1911 Cmetu-Chr5:19251102 Cmetu07g2311 Cmetu-Chr7:1142875 3.80E-26 dispersed
Cmetu05g1911 Cmetu-Chr5:19251102 Cmetu06g0378 Cmetu-Chr6:3991778 1.50E-115 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1911 . 59 492 CPP Transcription Factor Family AT3G22780 50.9 9.0e-103 371.7
Cmetu05g1534 . 31 510 CPP Transcription Factor Family AT2G20110 55.6 3.5e-134 475.7
Cmetu05g1534 . 29 517 CPP Transcription Factor Family AT4G29000 53.5 1.8e-139 493.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010127 0 1 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7981 PF03638 TCR 7.50E-12 No_clan Cmetu TF