Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1957 ATGGGGGGTGATGGAAAGCTCTTTACATTGGCTGAAGTCTCTCAGCACAATAATCCCAAGGACTGTTGGTTGATCATCAATGGCAAGACCCATTATTTTTCACTGTTGAATCAATATGTTTATCCATGGCTGCTAAACTGCTGCATGGTTTACAATGTAACCGAGTTCTTGGAAGACCATCCTGGTGGCGACGAGGTGTTGTTGTCTGGCACAGGTAAGGATGCAACTGATGATTTTGAAGACGTGGGTCATAGTGAGAGCGCAAGAGAAATGATGAGCAAATACTACGTTGGAGAGATCGACATCTCGACAATCCCAGAAAGGTCGACATACACAGCTCCAAAGCAGCCTCATTACAATCAGGATAAGACAACCGAATTCATCATTAAGCTCCTCCAGTTCTTGGTTCCTCTTGCAATCTTGGGATTGGCGGTCGGTATCCGCTTTTACAGCAAATCAAGCTGA 465 44.95 MGGDGKLFTLAEVSQHNNPKDCWLIINGKTHYFSLLNQYVYPWLLNCCMVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESAREMMSKYYVGEIDISTIPERSTYTAPKQPHYNQDKTTEFIIKLLQFLVPLAILGLAVGIRFYSKSS 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16573017 16576646 + PI0021973.2 Cmetu05g1957 357661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1957 154 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 101 IPR001199 -
Cmetu05g1957 154 Pfam Cytochrome b5-like Heme/Steroid binding domain 44 100 IPR001199 -
Cmetu05g1957 154 PRINTS Cytochrome B5 signature 88 100 IPR001199 -
Cmetu05g1957 154 PRINTS Cytochrome B5 signature 75 82 IPR001199 -
Cmetu05g1957 154 PRINTS Cytochrome B5 signature 50 60 IPR001199 -
Cmetu05g1957 154 PRINTS Cytochrome B5 signature 60 74 IPR001199 -
Cmetu05g1957 154 PANTHER CYTOCHROME B5 5 152 - -
Cmetu05g1957 154 SMART Cyt_b5_2 8 101 IPR001199 -
Cmetu05g1957 154 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 107 IPR036400 -
Cmetu05g1957 154 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 56 63 IPR018506 GO:0020037
Cmetu05g1957 154 Gene3D - 3 105 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1957 K23490 - - csv:101213506 254.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1957 Cmetu-Chr5:16573017 Cmetu09g1196 Cmetu-Chr9:134010 2.10E-44 dispersed
Cmetu04g1222 Cmetu-Chr4:17774539 Cmetu05g1957 Cmetu-Chr5:16573017 4.80E-45 wgd
Cmetu05g1957 Cmetu-Chr5:16573017 Cmetu06g2442 Cmetu-Chr6:2639169 7.00E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g751 . . . . . . . . . . . Cma19g00162 . . . . Cpe15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed04g2056 . Cmo19g00182 . . . . . . Bhi12g01507 Tan06g2314 Cmetu05g1957 . . . Lcy13g0455 . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156