Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0019 ATGTCTACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGGAGAAGCACCGCCCCTCATAGCAGAAGAATTTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTAACAATACTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCTCTGGACAGCTTAGCATATGGCCTTCGTCATGAACTGCTGCAGCGCCCCATCTTACGGATGTGGAGTGTTTTGAATTCCACATCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGCTGTATGAATCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTACAGGCATTCCATCGAGATCATAGAAGCAACAATACTTTTTATATTTACTCAGATCTTGCAAACTATTCTATCAGTGCCACTGAATCGCATGATATCAATAGACTTTCGTCAGGTGAAGGGTGGTCAGAGCCATCCATACACGGCAATGTTTCTGCAAAATGGTTCCGGGAACCACTTGATCCTATTAGCGGTGAAAAGATCGGGAAAGCGAGGCAAATTCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTACTTTCTGCAGCTCTGCCTGTTTCTGATGCTTCAAATGAAAGTATAGTTGCAGTGGTGGGCGTTACAACTGCACTTTATAGTGTAGGCCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAGGAGGGCTACTTGCTTGCTACTTCGGCCAATGCTCCCCTGTTAAGAAATACATCAAGGGGTCCAAAGCTTATGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTAGGAGCCGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATCGGCAATATTACATCGACTCATTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTCATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAGATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCTAGAAGAAGGGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGAACACCAATGGCTGCTGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTGCAACGGTTACTCAGATTAGAAAATGTTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGGGAACTCGAAGGACTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACGACATGCCGAAATTAGTTCGTGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAATTTAATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTAAAGAAATGGGAAAGTTTTGTATAGATCAGAAGAAGTCACGGTTTCCTAATCGGACAAAGATGAAACAACACGGAGACCACGCAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGTATCGATTCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCTTCAACAACCCGAACGCATGGTGGCACAGGTCTTGGACTATGCATTGTACGTACCCTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCAGGAACTCTAATGCGATTTTATTTGGTTCTCAGCACGCCTGTAGACTCCACAGATCATCACTGTCAATTTGATTTTGCAAAACATAATGCGGTGGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAAGAACTCTTTCAACCCAGAAGTTCCGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAGGATATGAAAAGCCAAGTATTCATCATTGTTGCCGATATCGGGATACTGGACTTAAGCACAGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGTAAAGCAAAATTTGCCTGGATGTTAAACCATGATACGTCTAACGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCACTGTACAGATCAAAAATGATTCATATTTTAGAAGCTGTTATGAAGGACAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAAAACCACATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATGTATTTGAACTTGGAAATTCTAACTCTCAGTGTGCAATTCAAGTCAGAGATGGCCAAGAAGAAACGACAACGAAACCTCAGTCACCATTTCTGCCCATTAACAATAGTTTAGTTGAGTTAACTCATGTACATTCGATCGAGAGTAATGTGAGGACCAGCAATCAGTATGACATGAGACAAAACCCATCAATGTCTCAATGTCAAAGTTCTGAATCCAAGGGACAGAATTTAGGATCCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAATAACGTTCAAGGGAAGAAGTCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGACACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCGAAGGTCATTGCTTTCGGGGATGGATTGCAGGCTGTCGAAGCTCTGACTGCCATGCTCAGCGCTGAAGAGCAAAGAAGGGAATTCCCCACTAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGTAGGAACGAGCCTTCACATTCCGATCGTAGCATTGACAGCCCATGCAATGTCGTCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCTCTCACTCAGAGAAGAGTCTAA 3516 41.72 MSTPLRKVFCRISGLATSLRRSTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVKLSEYVMRKYSKPVNQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATESHDINRLSSGEGWSEPSIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLMMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDRQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKFCIDQKKSRFPNRTKMKQHGDHAKNAFKKDNKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHHCQFDFAKHNAVASEWNELTLILQELFQPRSSENKKGFSPQDSLGETLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRKNALKTTSKEGDYHECLEIDSTQFETASSDDSDVFELGNSNSQCAIQVRDGQEETTTKPQSPFLPINNSLVELTHVHSIESNVRTSNQYDMRQNPSMSQCQSSESKGQNLGSNYPKSQGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAMLSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRRV 1171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30438489 30444954 + PI0029182.1 Cmetu06g0019 357681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0019 1171 ProSiteProfiles Response regulatory domain profile. 1037 1167 IPR001789 GO:0000160
Cmetu06g0019 1171 FunFam Histidine kinase 1-like protein 471 550 - -
Cmetu06g0019 1171 Gene3D - 1014 1169 - -
Cmetu06g0019 1171 MobiDBLite consensus disorder prediction 986 1027 - -
Cmetu06g0019 1171 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
Cmetu06g0019 1171 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Cmetu06g0019 1171 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Cmetu06g0019 1171 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Cmetu06g0019 1171 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Cmetu06g0019 1171 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Cmetu06g0019 1171 Gene3D - 471 550 - -
Cmetu06g0019 1171 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 747 IPR003594 -
Cmetu06g0019 1171 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Cmetu06g0019 1171 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Cmetu06g0019 1171 CDD REC_hyHK_CKI1_RcsC-like 1038 1163 - -
Cmetu06g0019 1171 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 753 - -
Cmetu06g0019 1171 SUPERFAMILY CheY-like 1034 1169 IPR011006 -
Cmetu06g0019 1171 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155|GO:0007165
Cmetu06g0019 1171 Gene3D - 551 749 IPR036890 -
Cmetu06g0019 1171 SMART REC_2 1036 1163 IPR001789 GO:0000160
Cmetu06g0019 1171 Pfam Response regulator receiver domain 1038 1161 IPR001789 GO:0000160
Cmetu06g0019 1171 SMART HKATPase_4 596 748 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0019 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0621 Cmetu-Chr5:4008532 Cmetu06g0019 Cmetu-Chr6:30438489 4.60E-64 dispersed
Cmetu06g0019 Cmetu-Chr6:30438489 Cmetu09g0510 Cmetu-Chr9:5665329 1.60E-43 dispersed
Cmetu06g0019 Cmetu-Chr6:30438489 Cmetu10g1485 Cmetu-Chr10:10089500 2.20E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0019 . 5 1168 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1410.6
Cmetu09g0510 . 103 1066 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1330.5
Cmetu10g1485 . 4 847 Histidine Kinase Gene Family AT2G01830 71.1 0.0e+00 1135.6
Cmetu11g2204 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.4e-269 926.4
Cmetu11g0071 . 1 936 Histidine Kinase Gene Family AT2G01830 50.9 1.5e-258 889.8
Cmetu07g2088 . 1 898 Histidine Kinase Gene Family AT5G10720 56.5 2.0e-251 865.9
Cmetu03g2257 . 1 1078 Histidine Kinase Gene Family AT1G09570 76.2 0.0e+00 1718.7
Cmetu03g0436 . 3 1146 Histidine Kinase Gene Family AT1G09570 71.4 0.0e+00 1631.3
Cmetu01g1663 . 17 1109 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1214.5
Cmetu06g1585 . 34 1098 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1156.4
Cmetu06g1585 . 13 1039 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1620.9
Cmetu12g0178 . 32 1054 Histidine Kinase Gene Family AT2G18790 59.9 0.0e+00 1241.5
Cmetu01g1663 . 25 1066 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Cmetu03g0436 . 22 1077 Histidine Kinase Gene Family AT2G18790 51.0 3.8e-308 1054.7
Cmetu03g2257 . 21 1012 Histidine Kinase Gene Family AT2G18790 50.2 5.1e-289 991.1
Cmetu01g1663 . 17 1113 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1382.9
Cmetu06g1585 . 21 1100 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1111.3
Cmetu06g1585 . 3 1100 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1664.8
Cmetu12g0178 . 39 1116 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1283.5
Cmetu01g1663 . 25 1112 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Cmetu03g2257 . 8 1073 Histidine Kinase Gene Family AT4G16250 50.1 8.1e-306 1047.0
Cmetu12g0178 . 16 1117 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1383.6
Cmetu06g1585 . 38 1098 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1238.4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7987 PF02518 HATPase_c 1.20E-22 CL0025 Cmetu TR