Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0041 ATGGCGAACGCTGCATCTGGAATGGCGGTAAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAACCAAGAGGAATTATCGATTCATTATATTCAAGATTGAGAATCAAGAAGTTGTTGTGGAGAAACTTGGAAGCCCCGAAGAGACTTACGATGATTTCACTGCTGCTATTCCTGCTAATGAATGTCGCTATGCTGTCTTTGATTTAGATTTCACTACCGATGAGAATTGCCAGAAAAGCAAGATTTTCTTCATTGCATGGTCACCTGACACATCAAAGGTGAGAAATAAGATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTACAAGCCACAGATCCTAGCGAAATGAGCTTCGACATAATCAAAGCTCGAGCTTTTTAA 414 40.34 MANAASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPANECRYAVFDLDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7134787 7136258 - PI0013451.1 Cmetu06g0041 357703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0041 137 SUPERFAMILY Actin depolymerizing proteins 3 135 - -
Cmetu06g0041 137 ProSiteProfiles ADF-H domain profile. 5 137 IPR002108 GO:0003779
Cmetu06g0041 137 SMART adf_2 12 137 IPR002108 GO:0003779
Cmetu06g0041 137 CDD ADF_cofilin_like 6 136 IPR017904 GO:0015629|GO:0030042
Cmetu06g0041 137 Gene3D Severin 1 136 IPR029006 -
Cmetu06g0041 137 FunFam Actin-depolymerizing factor 2 1 137 - -
Cmetu06g0041 137 PANTHER COFILIN-RELATED 2 136 IPR017904 GO:0015629|GO:0030042
Cmetu06g0041 137 Pfam Cofilin/tropomyosin-type actin-binding protein 14 134 IPR002108 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0041 K05765 - - csv:116402770 272.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0041 Cmetu-Chr6:7134787 Cmetu09g0176 Cmetu-Chr9:18115630 3.90E-58 dispersed
Cmetu06g0395 Cmetu-Chr6:1300159 Cmetu06g0041 Cmetu-Chr6:7134787 1.30E-61 wgd
Cmetu06g0041 Cmetu-Chr6:7134787 Cmetu09g1692 Cmetu-Chr9:3404654 4.60E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000141 6 14 5 5 6 6 11 5 5 6 6 6 12 6 6 9 6 7 12 5 7 7 6 5 7 5 5 13 9 5 213