Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0043 ATGCGTCTCGACCGGTGGGGGCAATCGGACCTTTTAGAGTGGGACAAGAACGCTATAATCAGACGTGTTGGAATTCCGGCCAGGGATATGAGGATCCTTGGTCCTGTTTTCTCACACTCATCTAATATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTTATAAAAGCTATAGTTACTGCAGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTCGCTAAGACAGGTTCATCTCAACTTGAAAATGATGGGAATGTATCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAGGCTGCTGAAGGTGAGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTAGTGTGCTTGTACTTAGATTCCAGCGTGGCAGACCTTGAGAGGGATGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTCGATGCTTTGCTGGGAGGAGGTGGGGCTTCCAACAGCACAACTGCTATCGTTCCTCATCTTCGTCGACTTAGTTCCAACAGGAGTGGCAGTGTGGTGACCAGCAATCTTTTGGATGATAATGACGTAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGCTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACTGAAGATTACGTCAACATTCAACTTGACAACCAAAGAAATGAACTCATTCAATTTCAGTTAACACTGACTATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATAGCTGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACAGATGGGGTGTTCGGGTACTTTGTCGGAGGTACTTCAGCAGGGTGTTTGTTGCTTTTCCTGCTTATTTTTGGGTATGCAAAATGGAAGAAACTTCTTGGTTCATGA 1119 44.06 MRLDRWGQSDLLEWDKNAIIRRVGIPARDMRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCLYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALLGGGGASNSTTAIVPHLRRLSSNRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLIFGYAKWKKLLGS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9063798 9070740 - PI0011773.1 Cmetu06g0043 357705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0043 372 Gene3D Magnesium transport protein CorA, transmembrane region 73 303 - -
Cmetu06g0043 372 Coils Coil 169 203 - -
Cmetu06g0043 372 Gene3D Magnesium transport protein CorA, transmembrane region 310 370 - -
Cmetu06g0043 372 FunFam Magnesium transporter MRS2-1 1 71 - -
Cmetu06g0043 372 Gene3D - 1 71 - -
Cmetu06g0043 372 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 370 IPR039204 -
Cmetu06g0043 372 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 308 359 IPR045863 -
Cmetu06g0043 372 CDD Mrs2_Mfm1p-like 1 369 IPR039204 -
Cmetu06g0043 372 ProSiteProfiles Pumilio RNA-binding repeat profile. 230 265 IPR001313 GO:0003723
Cmetu06g0043 372 Pfam CorA-like Mg2+ transporter protein 250 364 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0043 K16075 - - csv:101203496 710.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1707 Cmetu-Chr5:19412803 Cmetu06g0043 Cmetu-Chr6:9063798 5.50E-81 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0910 . 1 447 MRS2 Gene Family AT1G16010 84.8 1.2e-206 716.1
Cmetu03g0526 . 6 380 MRS2 Gene Family AT1G16010 52.4 1.9e-106 383.3
Cmetu05g0340 . 1 366 MRS2 Gene Family AT5G64560 79.1 1.0e-156 550.1
Cmetu05g1707 . 1 370 MRS2 Gene Family AT5G64560 69.3 9.5e-131 463.8
Cmetu01g1912 . 39 495 MRS2 Gene Family AT3G19640 67.0 1.6e-154 543.1
Cmetu06g0043 . 1 372 MRS2 Gene Family AT3G58970 68.9 1.8e-133 473.0
Cmetu03g0526 . 6 380 MRS2 Gene Family AT2G03620 68.7 2.9e-136 482.3
Cmetu04g0910 . 13 447 MRS2 Gene Family AT2G03620 53.3 4.5e-113 405.2
Cmetu05g0340 . 1 328 MRS2 Gene Family AT5G09690 74.6 1.0e-125 446.8
Cmetu05g1707 . 1 332 MRS2 Gene Family AT5G09690 64.8 1.1e-108 390.2
Cmetu04g0910 . 40 383 MRS2 Gene Family AT5G09690 50.3 6.1e-78 288.1
Cmetu05g0340 . 23 288 MRS2 Gene Family AT5G09720 66.9 3.5e-88 322.0
Cmetu05g1707 . 34 292 MRS2 Gene Family AT5G09720 62.0 8.0e-77 284.3
Cmetu04g0910 . 1 447 MRS2 Gene Family AT1G80900 83.2 6.0e-201 697.2
Cmetu03g0526 . 6 380 MRS2 Gene Family AT1G80900 53.7 1.8e-104 376.7
Cmetu12g1324 . 26 197 MRS2 Gene Family AT5G22830 86.6 6.0e-79 292.0
Cmetu12g0244 . 15 286 MRS2 Gene Family AT5G22830 57.3 2.4e-72 270.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47