Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0071 ATGGGGAAACAGAAGCAACAAGTGATCTCTCGATTCTTTGCTCCAAAACCCAAGTCACCATCTCTTTCTTCTTCTTCCTCCTCCTCCGCCACCGCCGCCGACATAACTCCGCCGACCCAACCGTTTTCACCTGCTAAGGTATCGGCCACAGTCACTTTCTCCCCTTCCAAACGCCTCATTTCTTCTGCCATCGCCTCTCAGTTAACACCCCCCAAATCCTCTAAACGCCCAAAACTCTCGCCTCATACCCACAACCCTCTGCCTTCCATCCCCAATCCCTCACTTCACAAAAGATTTCTCGACAAATACACCCCTTTGGAACAACAGGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTATAGGTACAGATTTTTTGGCCAAGATGCTGAAATAGCGGCTCGTGTTTTGGGTATTTATGCTCATTTGGATCATAATTTTATGACTGCGAGTATACCCACGTTTAGATTGAATGTGCATGTGAGAAGGCTGGTTAGTGCAGGGTATAAGGTGGGTGTTGTCAAGCAAACTGAAACTGCTGCGATTAAGGCTCATGGGTCGAATAAGTTGGGCCCGTTTTGTAGGGGATTATCGGCTTTGTATACTAAAGCAACATTGGAGGCAGCACAGAATTTAGGGGGAGCTGAAGAGGGATGTGCTGGAGAGAGTAATTACTTGTTCTGCTTGGTTGAAAATAGTATGTTGGTGCATAATTTGGACTATAGAATCGAGAATGGGGTCGATGTGAAAATTGGGATGGTTGCCATGGAGATATCAACTGGGGATCTTATTTATAGGGAATATGACGATAACTTTATGAGAAGTGGACTTGAGGCAATGCTCTTGAGCCTGTCTCCTGCTGAGTTACTTCTTGGAGATCCCATATCAAAGCCAACAGAGAAGTTATTACTAGGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCGTGTATCGCGAAATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGATGTCTTTGTATGAAAACATTGACCAAGATAACTTAACTGAAGATAACAACCCTGAAACAGTGTTGGTTGGACAAAAAGAAATAGTGAACATGCCAAATTTAGCTCTTCAAGCATTGGCCTTGACCATTCGTCACTTAAAGCAATTTGGTTTAGAAAGGATTGTGTCTTTGGGATCTTCTTTTAGGCCATTCTCATTGAAAATGGAGATGACCCTCTCAGGCAATACACTTACACAACTTGAGGTTTTGAAGAATAACGATGACGGTTCTGAAACTGGATCTTTATTACATTGCATGAATCATACTCTTACAATATTTGGTTCAAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGATAGAAACATGATAATAGCTCGTCAAGAGGCTGTTTCTGAGATTGCTGCATCTATGGTATCTTCAAAAGTATCTCCAAATAACAGAGTGTTGGATGAAGAAGATTCTGATGTCATTGTCATCGAACCAGAATTGAATTACATACTTTCTTCGGTGTTGACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACAAGAATCTTTCACCGGACAGCAGCCCCATCAGAGTTCATTGCAGTTATTCAAGCTATTTTATTTGCGGGAAAACAGCTTCAGCAGTTTCAAATTGATGAAAAAGATGACAATTGTTCCAGTGAAAGTATTATTGGCTCCAAGCTCCTAAGAAAGCTGATTTTCTCTGCTTCTTCCTCTGGTTTAATAAACATTGCTGCAAAGCTTTTGTCAACGATCAGCAAAGAAGCTGCAGATCAAGGGGACTTTCCAAACCTAATGATCATCTACAGTGACCAATTTCCAAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATGCCCTGATCACCTTCTACCGCAAGCAGCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAACTACGCATTTGATTGAGTTAGCCATAGATGTAAAGGTGCCTTCAAATTGGGTTAAGATCAATAGTACCAAGAAAACTGTAAGGTATCACCCACCAGAAGTATTGGCTGCATTAGATGAGCTATCGCTGGCAAATGAAGAGCTCATGGTTGCATCTCGTGATGCTTGGGATGACTTTCTGAGAGGTTTCAGCAGATATTATGCAGAGTTTCAAGCTGCTGTTCAAGCATTGGCTTCCATCGACTGTTTGTATTCGTTAGCAATTCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTACATGATGATGAACCTGCTCAGATACATATATGTTCTGGACGCCATCCGGTTTTGGAAGGTACATTACAAGGCAATTTTGTCCCAAACGACACAAATTTGGACGTGAATGGAGAGCATTGTCAAATTGTAACAGGACCAAACATGGGTGGAAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGTCTCAGGTCGGTTCCTTTGTACCGGCATTCTCTGCGAAACTTCATGTCCTGGACGGTATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACCTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCATCATTCCTCATCGCATTCCTTGGTTATAATTGATGAACTTGGGAGAGGTACAAGCACCCACGATGGTGTGGCCATTGCATATGCAGCTCTGCATAATCTTCTCCAGCAGAAGAAATGTTTGGTTCTCTTTGTCACCCACTATCCTAAAGTTGCTGAGATTGCAAAGGAATTTCCAGCATCTGCGGGGGTATACCGTGTTTCTTATCTTACTTCACACAAAAATCCAAGCTTGTCAGGCCCAAAATCAACTGAGGATGTGACTTACTTATATAAGCTCGTTCCTGGTGTTGCGGAGAGTAGTTTTGGTTTCAAGGTTGCACAACTTGCACAGATACCTTTATCGTGTATTGCACGGGCCACAGAAATGGGGGTCTGGTTGGAAGAAATAGTAACAAGAAGAGCACAGCTCAAATCCACTGAACAGCATTTGCCAGAAGTATCAGCTAAGGGGTTGGAATGGCAAAGCTTCCAGTCCTTCCTCGAGAGAATTGATGGTTATGAGGAATTCTTTCTGTTCTTGAAAGCTACAATACGTTCTGCTGATGATATGGGAACAGGGTGCCATCAAATTTACCAAGCTAGAAGCATGGCCATGGACTTGTTAGGAAGGTGA 3231 43.02 MGKQKQQVISRFFAPKPKSPSLSSSSSSSATAADITPPTQPFSPAKVSATVTFSPSKRLISSAIASQLTPPKSSKRPKLSPHTHNPLPSIPNPSLHKRFLDKYTPLEQQVVDLKKRYPDVLLMVEVGYRYRFFGQDAEIAARVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAQNLGGAEEGCAGESNYLFCLVENSMLVHNLDYRIENGVDVKIGMVAMEISTGDLIYREYDDNFMRSGLEAMLLSLSPAELLLGDPISKPTEKLLLGYAGPASNVRVERVSRNCFKDGSALAEVMSLYENIDQDNLTEDNNPETVLVGQKEIVNMPNLALQALALTIRHLKQFGLERIVSLGSSFRPFSLKMEMTLSGNTLTQLEVLKNNDDGSETGSLLHCMNHTLTIFGSRLLRQWITHPLCDRNMIIARQEAVSEIAASMVSSKVSPNNRVLDEEDSDVIVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILFAGKQLQQFQIDEKDDNCSSESIIGSKLLRKLIFSASSSGLINIAAKLLSTISKEAADQGDFPNLMIIYSDQFPKVARARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSNWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVHDDEPAQIHICSGRHPVLEGTLQGNFVPNDTNLDVNGEHCQIVTGPNMGGKSCYIRQVALIALMSQVGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILHHSSSHSLVIIDELGRGTSTHDGVAIAYAALHNLLQQKKCLVLFVTHYPKVAEIAKEFPASAGVYRVSYLTSHKNPSLSGPKSTEDVTYLYKLVPGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQLKSTEQHLPEVSAKGLEWQSFQSFLERIDGYEEFFLFLKATIRSADDMGTGCHQIYQARSMAMDLLGR 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7078540 7086881 - PI0020160.1 Cmetu06g0071 357733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0071 1076 Gene3D - 596 722 - -
Cmetu06g0071 1076 Pfam MutS domain I 104 214 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 Gene3D - 754 1031 IPR027417 -
Cmetu06g0071 1076 FunFam DNA mismatch repair protein MSH3 754 1027 - -
Cmetu06g0071 1076 ProSitePatterns DNA mismatch repair proteins mutS family signature. 879 895 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 MobiDBLite consensus disorder prediction 64 94 - -
Cmetu06g0071 1076 SMART DNAend 429 781 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 FunFam DNA mismatch repair protein 94 224 - -
Cmetu06g0071 1076 PIRSF Msh6 89 1038 IPR017261 GO:0006298|GO:0030983
Cmetu06g0071 1076 Gene3D MutS, connector domain 227 408 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 SUPERFAMILY DNA repair protein MutS, domain I 98 212 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 FunFam DNA mismatch repair protein Msh3 596 722 - -
Cmetu06g0071 1076 SUPERFAMILY DNA repair protein MutS, domain III 414 752 IPR036187 -
Cmetu06g0071 1076 Gene3D DNA repair protein MutS, domain I 94 223 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 107 1014 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cmetu06g0071 1076 MobiDBLite consensus disorder prediction 1 47 - -
Cmetu06g0071 1076 Pfam MutS domain II 255 391 IPR007860 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 754 996 IPR027417 -
Cmetu06g0071 1076 FunFam DNA mismatch repair protein 227 406 - -
Cmetu06g0071 1076 Pfam MutS domain III 414 746 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 Pfam MutS domain V 801 995 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 MobiDBLite consensus disorder prediction 17 47 - -
Cmetu06g0071 1076 Gene3D - 411 746 - -
Cmetu06g0071 1076 SMART mutATP5 798 997 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmetu06g0071 1076 SUPERFAMILY DNA repair protein MutS, domain II 229 357 IPR036678 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0071 K08736 - - csv:101214720 1929.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1664 Cmetu-Chr1:25325234 Cmetu06g0071 Cmetu-Chr6:7078540 1.10E-72 transposed
Cmetu02g1384 Cmetu-Chr2:22895768 Cmetu06g0071 Cmetu-Chr6:7078540 6.80E-53 transposed
Cmetu05g0798 Cmetu-Chr5:821429 Cmetu06g0071 Cmetu-Chr6:7078540 9.50E-25 transposed
Cmetu06g2305 Cmetu-Chr6:3041842 Cmetu06g0071 Cmetu-Chr6:7078540 4.60E-19 transposed
Cmetu06g0071 Cmetu-Chr6:7078540 Cmetu09g0951 Cmetu-Chr9:3276471 3.20E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36