Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0079 ATGGTGTCAGAAGGATCGGCATCAAGCGCTTCAGAACCGAAACCACTTGGAATTGCAAATGATGCGGACAGTTTTCTTAGCCCTAGATTCAAATCGGCGGCCGCCATGGCCGGCTGGGATGAAGAGGCTCTTCTAATCGCGAGCCTCGTGGTTGACGACACGCCGGAGAGAGAGTTCCAGCAGAAGAAACGATCTGATCTCCAGCGCAAGAGTCCTGCATCTGGTTCAAGAAGAAAACGGAGGACTTTGACGAGCATAATTTCGATTCCGGTGACTGTTCTTGACCTCGATGAAGAAGAACCCGCTGTGAAAGATGATGGTCCAAAACAAGATCCAAAAACTGCAGAAGCTGAAGCAAAGAAGAGTGATTCAATGGTTCAACAGAAAGCTGATGCTTCTTCTTTATCATCTTCAACTCTCCCATGCATCGATAAGCTCAGAGAAGAGCTTTCTTGTGCTATTTGTTTGGAAATTTGCTTTGAACCTAGTACCACACCATGTGGACACAGTTTCTGCAAGAAATGTCTAAGATCTGCAGCTGACAAATGTGGAAAAAGGTGCCCTAAATGCAGACAACTAATAAGCAATGGGAGATCTTGCACTGTTAATACAGTGCTTTGGAACACAATACAGCTTCTCTTTCCCAAAGAGGTTGAAGCAAGAAAGGAAGCAAAAGAGTGTAATAGCCATGAAAAGAAGATTCAAGACCCAGAAAAGGCATTCTATAATAGTCTGCAGAACTATAATACAAGACCAACCGGCACGTCGTCGAGTAGGCATGCTAGTAGTAGTTCAAGAAGAAGAGGGGAAATAACAGTTCGAGAGGAGGATGGTGAATCGGACAGCAGGATGACACAACGAGCTGCATCTTCAAATGCTGAAAGCAGAGTCCAGTCCAGAATGCACCGTCGAAGTATTCGACCAATGAGGATGGCGACTCGAGGTGCAGATGTAAGAAGTAGTAGGAGAGGTACGCCAGATCAAGATCAGGATGCTGCTTTAGCGCTGAGGTTACAAAGGGAAGAGTTTTTTGAGGCTTTTAGAGACACCACTCAAGTGCATACCAGAAGCTCGTTGTCCTTGACTAGAGCTAATATTAGAGCAATTGCTTCAAGGGCAGCCATTAACCTTCGCATTAGTGGCCACCAGAATTTGTAA 1158 45.42 MVSEGSASSASEPKPLGIANDADSFLSPRFKSAAAMAGWDEEALLIASLVVDDTPEREFQQKKRSDLQRKSPASGSRRKRRTLTSIISIPVTVLDLDEEEPAVKDDGPKQDPKTAEAEAKKSDSMVQQKADASSLSSSTLPCIDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKRCPKCRQLISNGRSCTVNTVLWNTIQLLFPKEVEARKEAKECNSHEKKIQDPEKAFYNSLQNYNTRPTGTSSSRHASSSSRRRGEITVREEDGESDSRMTQRAASSNAESRVQSRMHRRSIRPMRMATRGADVRSSRRGTPDQDQDAALALRLQREEFFEAFRDTTQVHTRSSLSLTRANIRAIASRAAINLRISGHQNL 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20524810 20527538 + PI0021747.1 Cmetu06g0079 357741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0079 385 ProSiteProfiles Zinc finger RING-type profile. 152 191 IPR001841 -
Cmetu06g0079 385 MobiDBLite consensus disorder prediction 98 132 - -
Cmetu06g0079 385 MobiDBLite consensus disorder prediction 246 262 - -
Cmetu06g0079 385 ProSitePatterns Zinc finger RING-type signature. 167 176 IPR017907 -
Cmetu06g0079 385 SMART ring_2 152 190 IPR001841 -
Cmetu06g0079 385 MobiDBLite consensus disorder prediction 246 329 - -
Cmetu06g0079 385 SUPERFAMILY RING/U-box 144 215 - -
Cmetu06g0079 385 MobiDBLite consensus disorder prediction 263 283 - -
Cmetu06g0079 385 MobiDBLite consensus disorder prediction 55 81 - -
Cmetu06g0079 385 Pfam Zinc finger, C3HC4 type (RING finger) 152 190 IPR018957 GO:0046872
Cmetu06g0079 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 221 IPR013083 -
Cmetu06g0079 385 MobiDBLite consensus disorder prediction 102 125 - -
Cmetu06g0079 385 PANTHER UNCHARACTERIZED 117 375 - -
Cmetu06g0079 385 MobiDBLite consensus disorder prediction 55 73 - -
Cmetu06g0079 385 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0079 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010096 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33