Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0130 ATGGCATGCAGAAGGTTTGCTGCGTGCTCATTTCAATCTTTCAAGCCTTACACAAAGATTTCCGAATACGTTGACCGAGTTCTTAGACCGAGTATTGTTCTAGATAAAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGAGCCTCTGTATGTCGTTTACATATCCCAAGTTATGGTACACATCGCATTGATACATTTCTGCCTGCATCGTCAATGAAATACTGGAACACTATCCCTCTTACTTCTATTGGGAATTTGTCAAATTATCGGAATTATTCATCGGCTTCTGGTAGAAAAGCTGATATAACTGGAGATACTGGTATTCCAGCAGCTTCTGCGGGTGCTGAACCGGATATCAGTAACCCCCCTGATGTTGGAAGGGACTTGCTCGAAAAGGTTAAGGATGTCTGGCAGAGTGCTGTTGATGCAGCATCTCTTACCGGGCAGAAGGCTAAAGAAGTGTCGGATGAATTATCTCCGCATGTAGATAAACTACTCGATTCACATCCGTATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTTCATAAGTACTCAATGCGAAGTCCTGTTGCCATAATATCTGGAACCTTACCTAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTCGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCATTTTCTCAAATTGGCGTGATGGTTGCACCAACTGCAATAGCACCGGAGTTTGTTTCACAGGCATGCAGGGGGGCTGTAATCCTTTCCCTTGTGTGGTTTATATATCGCTGGAAAACAAATGTGTTATCTCAAGCCTTGGCCACCCAGACTATTGCAGGGCTTGATCGGGACAGGTTACTTACCATTGACAAAGTTTCATCTGTTGCCCTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCCGGCGTGGCTGTTCAATCTATGTTGACGGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGCGGGACATACTTGGGAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCGCTATTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTAATTATAAATAAGTCGCGGGCACAGTGGCGTGCAATCACGAAGAGAGTTCCTTTGCAAGTTGATGATTTTAGTGCAGTTTCTCAGATAACAGATGGTATTAAGAATATGCTTATGTCTCACCCAAAGGTGTTCTTGGGCAAGGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTCGGTTGTAACCTTAAAAAAATGGGTAAAGATGAATTGTTCTCCACAGAGCAAGATATTCTCCTTCAGTCAGTACAAATCATTAAGGCAAATGGTGCAACCTTAGGAAGCACCATGTCAGATTGGACGAACAAGTAA 1566 42.34 MACRRFAACSFQSFKPYTKISEYVDRVLRPSIVLDKRYYKDESHSLKRASVCRLHIPSYGTHRIDTFLPASSMKYWNTIPLTSIGNLSNYRNYSSASGRKADITGDTGIPAASAGAEPDISNPPDVGRDLLEKVKDVWQSAVDAASLTGQKAKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRSPVAIISGTLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVMVAPTAIAPEFVSQACRGAVILSLVWFIYRWKTNVLSQALATQTIAGLDRDRLLTIDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKRVPLQVDDFSAVSQITDGIKNMLMSHPKVFLGKEAPYCFLSQIESTYAELTFGCNLKKMGKDELFSTEQDILLQSVQIIKANGATLGSTMSDWTNK 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1132891 1136770 - PI0002814.4 Cmetu06g0130 357792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0130 521 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 131 514 - -
Cmetu06g0130 521 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 267 349 IPR011014 GO:0016020
Cmetu06g0130 521 Gene3D - 262 364 - -
Cmetu06g0130 521 Gene3D - 366 414 IPR023408 -
Cmetu06g0130 521 Pfam Mechanosensitive ion channel 308 509 IPR006685 GO:0016020|GO:0055085
Cmetu06g0130 521 SUPERFAMILY Sm-like ribonucleoproteins 350 415 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0130 K22047 - - csv:101220483 964.526
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0130 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.2 7.5e-152 534.3
Cmetu06g1028 . 62 729 Mechanosensitive Ion Channel Family AT5G10490 58.2 2.0e-192 669.5
Cmetu03g1755 . 10 668 Mechanosensitive Ion Channel Family AT5G10490 54.4 2.6e-179 625.9
Cmetu03g1755 . 10 648 Mechanosensitive Ion Channel Family AT1G58200 53.4 3.6e-181 632.1
Cmetu06g1028 . 34 700 Mechanosensitive Ion Channel Family AT1G58200 52.8 1.5e-174 610.1
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G53470 56.1 1.8e-249 859.4
Cmetu01g0333 . 92 953 Mechanosensitive Ion Channel Family AT1G53470 51.0 1.0e-239 827.0
Cmetu11g1342 . 43 884 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.8e-237 817.8
Cmetu01g0333 . 60 953 Mechanosensitive Ion Channel Family AT1G78610 55.4 5.1e-273 937.6
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G78610 59.3 9.9e-269 923.3
Cmetu11g1342 . 217 891 Mechanosensitive Ion Channel Family AT2G17000 61.0 5.1e-225 778.1
Cmetu01g0333 . 267 941 Mechanosensitive Ion Channel Family AT2G17000 58.7 2.4e-222 769.2
Cmetu11g1342 . 1 668 Mechanosensitive Ion Channel Family AT2G17010 50.2 6.1e-165 578.2
Cmetu02g0585 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 9.0e-194 674.1
Cmetu07g1894 . 72 703 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.1e-178 622.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33