Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0162 ATGGTGGGCATTATTAGAGTGGGGCGTTGGAGGTTTGTGATGGCAGTGGTGGCAATAATGGCGATGGCAGTGGGGGAAGTGGCGGCGCTGACGGCGGCGGAGTGTAAGGCTGAGAGAGATATGGCTGTGAATGCGTGCAAATCGGTGTTATTTGGGAGAAATCCGTCGCCGGCGTGCTGCCAGAGGGCGAGAGTAAGCCATACAGAGTGTATTTGCCCCGCGGTGACGCCTAAGCTAATGACATATGTGGATCCTAATCGCGCCATTCGACTCATTGAAGGCTGCGGCCGTAAGGTCCCTCGCCATTTCAAATGTGGAAGTTTTACCACTCCATGA 336 54.46 MVGIIRVGRWRFVMAVVAIMAMAVGEVAALTAAECKAERDMAVNACKSVLFGRNPSPACCQRARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSFTTP 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26583778 26585405 - PI0010170.1 Cmetu06g0162 357824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0162 111 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 44 101 IPR036312 -
Cmetu06g0162 111 Gene3D - 32 103 IPR036312 -
Cmetu06g0162 111 Pfam Probable lipid transfer 16 105 IPR016140 -
Cmetu06g0162 111 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 14 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0162 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0162 Cmetu-Chr6:26583778 Cmetu06g0502 Cmetu-Chr6:29167970 1.60E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g554 . . . . . . . . . . . . . . Sed04g1648 . . Bhi11g00086 Tan01g2110 Cmetu06g0162 . . Mch10g1602 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012137 0 1 0 0 0 0 1 1 1 2 0 0 1 2 2 2 0 0 2 1 2 0 1 1 1 0 1 1 1 6 30