Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0182 ATGTTTATTGGATTTCATCACCATGAGATTTTGGTGTCTGCGGATGGTGCGGTGGTGATGGATGGGTCGGATTTCCCTGTGGATGTTGGGAATGGAACTACTTTGGCCGGGTATCCAATGACGGATCTGAAAACGTCGATTGAAACCGCCGGTGATATTAATCAGATTCAGGCGACAGTGGAGTTGACGGGAACGCAATTCGGAATTAAGCCGCCGGGTGTTCCGATGCCGAAGACCATTCGGCTTGTTAACGATGGATTTAAGTGCCCTGCCCCTCGCCATCGCGGTAAGAGATCAATGCATGTATGCTGCAAAAAGGATCCAAAGTTCAAGGTGAAAAAAGAAAAAAAGACCAAATTTTTCGCTCGCCAAAATGGAGATCTCTCACTCACTTATGATGTAATGCAAGCTTTTGGAAATAATTATCTTGCTCAAGTTACAATTGACAACAACAATCCTCTTGGCCGTCTTGATCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTCAGAGCATGAGAGGAGCTTACACTCATACAAGAGATTTATCTCAATGCGTTTATGGTCCTGCTGGCCAATACTATCAAGATTTCGACTTCACTCAAGTCATGAGTTGCGATAAGCGACCCGTAATCGCAGACCTTCCTGCCGATCGTGTTAATGATGATAAAGTCGGCAAGTTGCCGTATTGTTGTAGGAATGGAAGCTTATTGCCAACATTAATGGATGAGAGTAAAGCAAGGTCTATTTTTCAATTACAAGTCTATAAGCTTCCACCGGATATGAACAGAACCGCACTTAATCCGCCACAGAAATGGAAGATCTCTGGCGTTCTGAATCCAAAATACGTTTGTGCAGCACCACTCCGAGTCGAACCAACGGAGTTCCCTGACCCGAGTGGACTTCAAGCAATGAGTACCTCGATTGCAAGTTGGCAAATTATATGCAACATTACAAGGCCAAAGGTGAAGCAATCAAAATGCTGTGTTTCATTTTCAGCTTATTATAATGACTCTGTTATTCCTTGCAATACTTGTGCTTGTGGGTGTGAAGATATTGATACTGATACTTGCAATCCAAATGCACATTCAATGCTGCTCCCTCCAGAAGCACTTTTGGTTCCATTTGCTAACAGGACAGCAAAAGCTAGAGCTTGGGCTAAAATTAAGCATTACCGAAATCCCAAAAAAATGCCCTGTCCTGATAATTGTGGGGTAAGCCTAAATTGGCATATCAACTCTGATTATACTAATGGATGGACTGCAAGATTAACACTCTTCAATTGGGAAGATTATCCATTTGAAGATTGGTTTACTGCCATTCAGTTAAACAAGGCTGGTCGCGGTTACGAAAACGTTTATTCCTTCAATGGAACCCGGCTTCCCAACATCAAAAATACAATCTTCCTTCAAGGTCTGCCTGGTTTAGCTTACTTGATGGGAGAGGTTAATGGGACCAATCCTAAAACTGATCCAAGAGTTCCTGGGAAGCAACAATCTGTTATTTCTTTTACCAAGAAGGGTCTACACGACATCGACATACTACGGGGCGATGGTTTCCCGATCAAAGTCTTTTTCAATGGCGAAGAATGTGCACTTCCAAAGGATATTCCCACGGCAAGTTCAGCCCACCACCATTCTGGCGACGGTTTCATGTCACTTATCCTCATCTTAGCCCTTACGTTCGTGTTTATAACCAAACTCTTCCATTGA 1719 43.11 MFIGFHHHEILVSADGAVVMDGSDFPVDVGNGTTLAGYPMTDLKTSIETAGDINQIQATVELTGTQFGIKPPGVPMPKTIRLVNDGFKCPAPRHRGKRSMHVCCKKDPKFKVKKEKKTKFFARQNGDLSLTYDVMQAFGNNYLAQVTIDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTHTRDLSQCVYGPAGQYYQDFDFTQVMSCDKRPVIADLPADRVNDDKVGKLPYCCRNGSLLPTLMDESKARSIFQLQVYKLPPDMNRTALNPPQKWKISGVLNPKYVCAAPLRVEPTEFPDPSGLQAMSTSIASWQIICNITRPKVKQSKCCVSFSAYYNDSVIPCNTCACGCEDIDTDTCNPNAHSMLLPPEALLVPFANRTAKARAWAKIKHYRNPKKMPCPDNCGVSLNWHINSDYTNGWTARLTLFNWEDYPFEDWFTAIQLNKAGRGYENVYSFNGTRLPNIKNTIFLQGLPGLAYLMGEVNGTNPKTDPRVPGKQQSVISFTKKGLHDIDILRGDGFPIKVFFNGEECALPKDIPTASSAHHHSGDGFMSLILILALTFVFITKLFH 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25859510 25862771 + PI0028151.1 Cmetu06g0182 357844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0182 572 Pfam COBRA-like protein 142 321 IPR006918 GO:0010215|GO:0016020
Cmetu06g0182 572 PANTHER COBRA-LIKE PROTEIN 7 1 566 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0182 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0182 Cmetu-Chr6:25859510 Cmetu06g2109 Cmetu-Chr6:5264543 8.80E-205 dispersed
Cmetu06g0182 Cmetu-Chr6:25859510 Cmetu04g0125 Cmetu-Chr4:23846411 1.60E-262 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g458 . . . . Bpe09g00187 Bpe08g01136 . Bma13g01035 Cmo16g00909 Cmo04g01012 . . . . Sed07g1929 . . Bhi09g01934 Tan01g4517 Cmetu06g0182 . Hepe01g1303 . . Cla10g00527 Cam10g0521 Cec10g0538 Cco10g0528 Clacu10g0543 Cmu10g1369 Cre10g0772 Cone6ag0084 . Cone14ag1126 . Lsi04g01234 Csa03g00533 . Cme06g02279 . Blo10g00811 . Bda12g00896 . . Bma07g01310 . . . . Cma04g00942 Cma16g00850 Car04g00880 Car16g00854 . Cpe01g00854 . . . . . . . Cla05g01523 Cam05g1636 Cec05g1640 Cco05g1673 Clacu05g1626 Cmu05g1523 . Lsi05g00621 . Chy06g01797 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g0745 . 48 447 COBRA Gene Family AT5G60920 81.0 1.3e-210 729.2
Cmetu07g0296 . 44 449 COBRA Gene Family AT5G60920 75.7 1.2e-198 689.5
Cmetu07g1414 . 31 423 COBRA Gene Family AT5G60920 68.0 7.8e-179 623.6
Cmetu02g1379 . 1 380 COBRA Gene Family AT5G60920 68.0 6.2e-168 587.4
Cmetu12g1371 . 43 442 COBRA Gene Family AT5G60920 61.2 7.3e-153 537.3
Cmetu06g2325 . 23 418 COBRA Gene Family AT5G60920 52.8 3.1e-127 452.2
Cmetu07g0296 . 14 452 COBRA Gene Family AT3G02210 74.0 3.1e-205 711.4
Cmetu02g0745 . 23 451 COBRA Gene Family AT3G02210 73.9 7.7e-204 706.8
Cmetu07g1414 . 5 415 COBRA Gene Family AT3G02210 67.5 3.3e-178 621.7
Cmetu02g1379 . 3 381 COBRA Gene Family AT3G02210 68.0 3.6e-161 565.1
Cmetu12g1371 . 31 428 COBRA Gene Family AT3G02210 61.8 9.6e-154 540.4
Cmetu06g2325 . 12 402 COBRA Gene Family AT3G02210 56.3 1.2e-135 480.3
Cmetu02g0745 . 21 446 COBRA Gene Family AT3G29810 74.2 4.6e-201 697.6
Cmetu07g0296 . 29 447 COBRA Gene Family AT3G29810 72.8 4.4e-196 681.0
Cmetu07g1414 . 14 410 COBRA Gene Family AT3G29810 67.8 1.1e-175 613.2
Cmetu02g1379 . 3 363 COBRA Gene Family AT3G29810 67.0 3.7e-158 555.1
Cmetu12g1371 . 31 445 COBRA Gene Family AT3G29810 58.2 1.1e-149 526.9
Cmetu06g2325 . 4 414 COBRA Gene Family AT3G29810 55.0 4.6e-137 485.0
Cmetu07g1414 . 9 339 COBRA Gene Family AT5G15630 81.6 7.4e-175 610.1
Cmetu02g1379 . 1 291 COBRA Gene Family AT5G15630 85.6 3.0e-160 561.6
Cmetu02g0745 . 31 361 COBRA Gene Family AT5G15630 73.5 4.4e-151 531.2
Cmetu07g0296 . 29 357 COBRA Gene Family AT5G15630 69.3 9.4e-146 513.5
Cmetu12g1371 . 30 349 COBRA Gene Family AT5G15630 63.4 2.9e-131 465.3
Cmetu02g0745 . 30 224 COBRA Gene Family AT5G60950 58.7 1.1e-64 243.4
Cmetu07g0296 . 27 220 COBRA Gene Family AT5G60950 60.0 7.1e-64 240.7
Cmetu07g1414 . 27 207 COBRA Gene Family AT5G60950 56.9 3.4e-58 221.9
Cmetu12g1371 . 39 221 COBRA Gene Family AT5G60950 51.9 3.5e-47 185.3
Cmetu02g1379 . 3 159 COBRA Gene Family AT5G60950 55.4 3.3e-45 178.7
Cmetu06g2325 . 10 405 COBRA Gene Family AT1G09790 60.1 4.5e-148 521.5
Cmetu07g0296 . 25 427 COBRA Gene Family AT1G09790 54.7 4.7e-137 485.0
Cmetu02g0745 . 32 432 COBRA Gene Family AT1G09790 53.6 4.5e-132 468.4
Cmetu07g1414 . 8 410 COBRA Gene Family AT1G09790 51.2 6.1e-129 458.0
Cmetu02g1379 . 1 362 COBRA Gene Family AT1G09790 53.7 1.9e-122 436.4
Cmetu06g2109 . 34 642 COBRA Gene Family AT4G16120 67.4 3.3e-256 881.3
Cmetu04g0125 . 49 669 COBRA Gene Family AT4G16120 51.6 9.9e-200 693.7
Cmetu06g0182 . 1 562 COBRA Gene Family AT4G16120 54.0 1.9e-190 662.9
Cmetu06g2109 . 12 634 COBRA Gene Family AT3G16860 63.4 4.6e-242 834.3
Cmetu04g0125 . 43 652 COBRA Gene Family AT3G16860 50.8 7.5e-192 667.5
Cmetu06g0182 . 1 567 COBRA Gene Family AT3G16860 52.9 1.2e-181 633.6
Cmetu06g2109 . 7 629 COBRA Gene Family AT5G49270 62.3 5.2e-241 830.9
Cmetu04g0125 . 53 649 COBRA Gene Family AT5G49270 51.3 2.6e-192 669.1
Cmetu06g0182 . 1 565 COBRA Gene Family AT5G49270 51.4 9.0e-185 644.0
Cmetu04g0125 . 10 669 COBRA Gene Family AT3G20580 60.2 9.6e-251 863.2
Cmetu06g0182 . 1 568 COBRA Gene Family AT3G20580 62.1 7.6e-224 773.9
Cmetu06g2109 . 27 626 COBRA Gene Family AT3G20580 54.6 5.1e-204 708.0
Cmetu04g0125 . 5 660 COBRA Gene Family AT4G27110 57.3 2.3e-228 788.9
Cmetu06g0182 . 1 568 COBRA Gene Family AT4G27110 63.4 1.1e-222 770.0
Cmetu06g2109 . 24 644 COBRA Gene Family AT4G27110 52.3 1.3e-199 693.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55