Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0240 ATGTTATGGTTGCTGATGTCTAGATCCAGAACACTGAGGCTTGGGATTTGCAACTTTTTTTTCCTATGTGGTACAGATTGTAGAATTTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTTCACTCTTTGACAGGTCATACTGAATCTACATATGTACTCGATGTTCATCCTTTCAATCCGAGGATTGCTATGAGTGCTGGATACGATGGAAAGACGATAGTTTGGGATATTTGGGAAGGCACACCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTTGATGGGAAGTTTTCATCAGACGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACAGGGCAGGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTTGGTGACTATCGCCCACTTATTCAGGATCCTTCCGGCAATGTAGTTGACCAGGAAACCCAACTCAGTACTTACAGAAGGAATTTGCAAGATCTTCTTTCCGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGACGTTTAGGTGCTATGGGTCTTGAGTGGCGTCCCTCTTCTCTAAAACTATCTGTTGGGCCCGACTTCAATCTCGACCCTGATTACCAATTGCTGCCATTGGCAGACTTGGACATGTTGGTTGAACCATTGCCTGACATTGTGGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGAGGATACTGATTCAGAATACAACGTCACTGAAGATTATTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCGAATTGCTCAACCGATCCGGAATGCAGCTCTGAAGACACAGGGATTGACGATGCTCCTGCTGATGGTCTTCGAAGATCAAAAAGGAAAAAACAGAAGGCAGATATGGAAGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGAAATATGGATGAGTATGAAGGTGATGCTGTCAGGAGTTCCAGGAGTCGGAAGTCAAAGTCTGGCCATAAGCCTTCCAAAAAGAAATCAGCATCCAAGTCCTTAAGACCTCAAAGAGCAGCTGCACGTAATGCTCGCAATTGGATATCATCATTTAAGGGAAAATCTACAGATGGAGAAGAAGAATATGAGTCAGGAGGTGATTGCTCAGAAAGTGAATCTACATTAGAAGATTCAGACATTGAGAGCGATGAATATGAAAGGTCATTGGAAAACAGGATTAAGCATTCAAAAGGGAAAGAAGTATTCCTAGATGGAGCCGAGGAAATAACAAAATCTCTTTATGTTCCTGAATCTCGTGTAGATGCGGGAAACAGAAAGAAGCTGATCCTTAAATTCTCCGTTAAGAATCTAAATAAGGTTGATCCTCCTCCAAACACAGCACTTATTGGTTCCAACATGGCTGATGTGGCTAGCTCTTCATCAAGATCACCGAAGGAAGTTGTTGAAACCAGTCAGAATCTTGTGAGATCTGAAAGCCAATTTGTAAATATTGATGGAAATTCTGATCTGACTGAGGTCTACACAAATGGGAACATAAGATGGGGAGGGTCCAGGGTTCGTTCGTCCAAGCGCATAAGATTTGGGGATACCGTGCCTTCTGATGCATATGCAGTATCTAATTCACTTCCCAATGGCGATCATAATGAAAATGAGAATGCAGTCGATGAATATTTAGAACGACAAAATCATTTTGGTGCACCATCCTCCCATGCAAAGGTACAGAAATTTTGTTCAGATGAAATGGACGCAGTATCTCCCACAAATTTGAAGAATGATGATGACAATGCTTCTGGACATTCTCAGGAGATGGTTAATGGTGGAGAGCTTAAATGTGTTGGCAACAGCAAGTCATGTGACCATGATGATTCAAATAATTTGAATTTCGTGCTTTTTTCTGGCGCAACTACCACATCAATACAAAATGGGACTCCTGCTCCTGAGCAAACTGAAAATCTTGCACTGATGCGTAGAAAGATAAGATTCAAGAGTATTTCCTTGGATCCTGAACATTCTTTGAAGCATAAAATAGAATCCATAGATGAAAGCTCGAAGAATGATGAATACAATACAGTATCTGGAAGCCCTCAGCATCCAAATGGGCTGCAGGATAGTGTCATGAATGAAACTTATTCTGATCTTAGAAATAATTGCCCACAAGATATGGGCATTGCAATTGATGAAAAGCCAGTTTCAACCTTATGCAGATCAGAGTTGCAAGCAGTTGAGACAAACAAAATGTACACTGCAGTTTATAAAAGATCTAAGTCAAACAAAGGAAAGAGCAATATAGATAGCAATGGTTGTGCCTCAGAAGAACATGCCTTGGGCAACAGTAGTCTACCTGCTGATGCAGACAGTCACAAAATTATGCACCGTAGGGCACGGTCTATAAGGTTTAAGGAGTCCTCGTATGATCTAAATAATGTGGGTGATGATCTAAAGTCAGACGAAGATCAAGAACTTGAACAGAGATCAAGACGTTCTGGAAATTCTTCTGCAAACAGATCCCATATTCCAAGTGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCCAGATCCACTCGAAACAGAAGGGGTACTCTGACTCAAGACATAAATCCAGTAGACAGAAGAAAATCGGTTCAATGTGCCAGAAAAGGATCGTGGTTAATGATGCCTGCACATGAGGGTGGCTCCAGATATATTCCCCAACTCGGAGATGAAGTTGCGTATCTGAGGCAGGGCCATCAGGAATACATAGATCACTGTTGTGCAAATTACTGTCACACAAAAGACATGGGACCTTGGACCTCAAACCGAGGAACCATACGAGCTGTTGAGTTCTGTAAGGTTGTGGAGCTTGTTTATTCAACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGCTACTCCAGTTTATAGATCCATCTTCCCATGTACACCTCCAATCTTTCAAGTTGACACTGCCCGAGTTGACTAGTTTCCCCGACTTCTTAGTTGAAAAATCTCGGTTCGAAGCAGCAATGCAGAGGAATTGGACGTTCAGGGACAAGTGCAAAGTGTGGTGGAAAAATGACGTTGGAGTAGATGGTAGTTGGTGGGATGGTCGAATTGTCTCTGTCCAGGCAAAATCTTCAGAGTTCCCAGAAAGTCCTTGGGAGAGGTACACAATCAAGTATAGGAGTGATCCTGCTGAACCACATTTACATAGTCCTTGGGAGCTCTATGATACTGTTATTGGGTGGGAACAGCCTCGAATAAATGATGAAACCAAATCAAAGTTGTTAATGGCCATTGATAAATTAATGTCACCCTCTATGCAGGGTCGTTATGGGATCCAAGATTTGATGATTCTCTCACGGAAGACACAATACAAGAACAGGTTTCCTGTGCCATTGTGCCTTGAGATAATCCAGGAAAGATTACAGAATGATTACTACCGAAGCTTGGACGCTTTGAAGCATGACTTTAGGGTAATGTTATCGAATTTCGAGTCATTCGTGGCAAAGAATGAAGACATGTCAAAGAAAATTAGACGATTGTCGGACTGGTATGATCGCAACATATCAACTCTATAG 3579 41.88 MLWLLMSRSRTLRLGICNFFFLCGTDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLVEPLPDIVDAMDWGPENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKKQKADMEVMTSSGRRVKRRNMDEYEGDAVRSSRSRKSKSGHKPSKKKSASKSLRPQRAAARNARNWISSFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLENRIKHSKGKEVFLDGAEEITKSLYVPESRVDAGNRKKLILKFSVKNLNKVDPPPNTALIGSNMADVASSSSRSPKEVVETSQNLVRSESQFVNIDGNSDLTEVYTNGNIRWGGSRVRSSKRIRFGDTVPSDAYAVSNSLPNGDHNENENAVDEYLERQNHFGAPSSHAKVQKFCSDEMDAVSPTNLKNDDDNASGHSQEMVNGGELKCVGNSKSCDHDDSNNLNFVLFSGATTTSIQNGTPAPEQTENLALMRRKIRFKSISLDPEHSLKHKIESIDESSKNDEYNTVSGSPQHPNGLQDSVMNETYSDLRNNCPQDMGIAIDEKPVSTLCRSELQAVETNKMYTAVYKRSKSNKGKSNIDSNGCASEEHALGNSSLPADADSHKIMHRRARSIRFKESSYDLNNVGDDLKSDEDQELEQRSRRSGNSSANRSHIPSEEWGSSSRMTVGSRSTRNRRGTLTQDINPVDRRKSVQCARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIDHCCANYCHTKDMGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLQFIDPSSHVHLQSFKLTLPELTSFPDFLVEKSRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQAKSSEFPESPWERYTIKYRSDPAEPHLHSPWELYDTVIGWEQPRINDETKSKLLMAIDKLMSPSMQGRYGIQDLMILSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLDALKHDFRVMLSNFESFVAKNEDMSKKIRRLSDWYDRNISTL 1192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5367356 5375754 - PI0021957.1 Cmetu06g0240 357902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 255 279 - -
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 758 792 - -
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 380 402 - -
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 241 409 - -
Cmetu06g0240 1192 Coils Coil 149 169 - -
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 690 709 - -
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 684 709 - -
Cmetu06g0240 1192 SUPERFAMILY Bromodomain 1124 1190 IPR036427 GO:0005515
Cmetu06g0240 1192 Pfam Bromodomain 1123 1177 IPR001487 GO:0005515
Cmetu06g0240 1192 Gene3D - 14 133 IPR015943 GO:0005515
Cmetu06g0240 1192 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 85 IPR001680 GO:0005515
Cmetu06g0240 1192 SMART WD40_4 36 76 IPR001680 GO:0005515
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 334 351 - -
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 811 869 - -
Cmetu06g0240 1192 FunFam Bromodomain and WD repeat-containing protein 10 132 - -
Cmetu06g0240 1192 PANTHER WD REPEAT DOMAIN 9 25 1190 - -
Cmetu06g0240 1192 Gene3D - 1089 1192 IPR036427 GO:0005515
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 811 830 - -
Cmetu06g0240 1192 SUPERFAMILY WD40 repeat-like 18 122 IPR036322 GO:0005515
Cmetu06g0240 1192 ProSitePatterns Trp-Asp (WD) repeats signature. 63 77 IPR019775 -
Cmetu06g0240 1192 CDD Bromo_WDR9_I_like 1068 1192 - -
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 831 869 - -
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 287 333 - -
Cmetu06g0240 1192 MobiDBLite consensus disorder prediction 758 778 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0240 K11797 - - csv:101214610 2184.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41