Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0246 ATGGCTGCTTTTGCCTCACTACCCCTAACTTCATCTTCTTTACATCCAGTTGTCCAATTCTCACCTCTTGTATTCTCCTCAAAAGTTGTATATGACCCAAGTTTCTATTGCTTCACAGTCAGATCAATCAGATATGGAAACCAAAAATTTTCCTCTCAGACCAACCCAAGGAGTCTGATAATTCTTGGGGCAGCAACAAAACAAGCAAAAACACCAGCTGAAGAGGATTGGAAGGTGAAGAGGGAACTTCTGCTGCAGAAAAGGGTAAGGAGTGTGGATGCTAATGAAGCTCTGCGCCTTCAGAAGGAAAATAACTTTGTGATTCTTGATGTCAGGCCAGAAGCAGAATTCAAAGAGGGCCATCCACCAGGTGCCATTAATGTGCAAATCTACAGGCTTATAAAGGAGTGGACAGCATGGGACATAGCCAGGAGAGCTGCATTTGCATTTTTTGGCATCTTTTCGGGTACCGAAGAAAACCCAGAATTCTTGCAAAGTGTAGAATCTAAAATAGATAAAGATGCCAAAATAATAGTAGCATGCTCATCAGGTGGAACAATGAAACCTACCCAGAATCTTCCAGAAGGTCAACAATCAAGGTCACTGATAGCAGCCTACTTGTTGGTTCTCAATGGCTATGCCAACGTGTTTCACTTAGAAGGTGGTCTCTACAATTGGTTCAAAGAAGGGTTGCCTGTAGTTTCAGAAGAATAA 714 42.3 MAAFASLPLTSSSLHPVVQFSPLVFSSKVVYDPSFYCFTVRSIRYGNQKFSSQTNPRSLIILGAATKQAKTPAEEDWKVKRELLLQKRVRSVDANEALRLQKENNFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESKIDKDAKIIVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYANVFHLEGGLYNWFKEGLPVVSEE 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8380770 8382966 + PI0008640.1 Cmetu06g0246 357908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0246 237 Gene3D - 76 233 IPR036873 -
Cmetu06g0246 237 CDD RHOD 96 226 - -
Cmetu06g0246 237 SMART rhod_4 92 232 IPR001763 -
Cmetu06g0246 237 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 18 236 IPR043186 -
Cmetu06g0246 237 ProSiteProfiles Rhodanese domain profile. 102 235 IPR001763 -
Cmetu06g0246 237 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 87 235 IPR036873 -
Cmetu06g0246 237 Pfam Rhodanese-like domain 94 227 IPR001763 -
Cmetu06g0246 237 FunFam Rhodanese-like domain-containing protein 14, chloroplastic 76 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0246 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g997 . Blo15g00078 . . . Bpe07g01026 . . Cmo16g00036 . . . . . Sed07g0876 . Cpe14g00024 Bhi01g01519 Tan01g0061 Cmetu06g0246 . Hepe07g0039 Mch10g0037 . . . . . . . . . . . Cone15ag0001 . . . Cme06g01169 . . Bda06g00795 . . . . Bma12g01221 . . . Cma16g00031 . Car16g00029 . . . . . . . . . . Cla05g00987 Cam05g1078 Cec05g1086 Cco05g1080 Clacu05g1072 Cmu05g1022 Cre05g1096 . Csa03g01965 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1736 . 59 376 Sulfurtransferasese/Rhodanese AT1G79230 74.8 2.6e-145 511.9
Cmetu06g1736 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 73.6 4.8e-113 404.4
Cmetu12g1317 . 36 312 Sulfurtransferasese/Rhodanese AT5G23060 63.7 2.5e-84 309.3
Cmetu06g1236 . 17 349 Sulfurtransferasese/Rhodanese AT4G01050 50.5 9.9e-91 331.3
Cmetu12g0103 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 64.0 5.4e-226 780.8
Cmetu10g1822 . 4 439 Sulfurtransferasese/Rhodanese AT2G40760 65.9 2.0e-157 552.7
Cmetu04g1247 . 84 428 Sulfurtransferasese/Rhodanese AT1G17850 65.6 2.9e-142 502.3
Cmetu08g0002 . 41 246 Sulfurtransferasese/Rhodanese AT2G42220 74.3 1.3e-85 313.2
Cmetu08g1671 . 4 217 Sulfurtransferasese/Rhodanese AT3G08920 57.5 1.0e-65 246.9
Cmetu02g0106 . 1 295 Sulfurtransferasese/Rhodanese AT4G24750 67.7 5.3e-113 404.4
Cmetu05g0863 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 67.0 2.1e-85 312.8
Cmetu06g0499 . 113 464 Sulfurtransferasese/Rhodanese AT5G55130 71.6 7.4e-149 523.9
Cmetu06g0246 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 80.1 2.3e-79 292.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30