Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0270 ATGGCTGCTTCATCATCCCTTATGTCACACTCTCTGCAAGCGCATGCTTCCCCTGAAACAGCAATAAAATGCTGTAAAGGGTATATGTATGGTAACTTATGTTCATCGTATTCTCGGATTGGATACTCCAAGTCCAAGTTCCTAACAAGTCCTAAGTTTTTGCATAACGACAATTCAACAAAATGGGAACATATTGAGAAATGTCCAACTAGGAATGAAATCTGGTGCCGAGCTGTGGAAATCGAGAATTCAGTTTCTCCTTTTGTTAGCAAAAAGTTTGAGCTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGAGATTCTCAACTATATTTTTGAAGTTGCACTTGATATGGAAAAGATTGAAAAAAGTTCGTCTAAAAGCCAAATGCTCAAGGGATATTTGATGGCTACCCTGTTTTACGAGCCCTCTACTAGGACTAGGCTTTCGTTTGAATCTGCCATGAAAAGGTTAGGTGGGGAGGTATTGACAACTGAAAATGCACGGGAGTTTTCTTCAGCAGCCAAAGGAGAAACCCTTGAAGATACCATCAGAACTGTTGAGGGATATTCAGATATAATTGTGATGCGGCATTTTGAAAGTGGTGCTGCAAAGAAAGCTGCTGCAACAGCTAGCATTCCTATTATTAATGCTGGTGATGGTCCTGGACAACATCCAACTCAGGCTCTTCTAGATGTATATACCATTCAGAGAGAGATAGGAAAACTTGATGGAATTAAAGTCGGGCTTGTGGGAGATCTTGCTAATGGGAGAACTGTACGGTCACTCGCATATTTGCTCGCCAAGTATAAAGATGTGAAAATATACTTTGTCTCTCCAGATGTTGTAAAAATGAAGGATGATATAAAAGACTATTTGACATCACAAAATGTGAAATGGGAAGAATGTGACAACTTGATGGAAGTTGCATCAGAGTGTGATGTGGTATATCAAACTCGCATTCAGCGGGAACGATTTGGAGAGAGGATTGATCTTTATGAACAAGCTAGAGGCAAGTACATTGTGGATAAAAATGTGTTAAAAGTGATGCAGAGACATGCTGTGGTCATGCACCCCCTCCCTAGGCTTGATGAGATCACTGTTGATGTAGATGAGGATCCAAGGGCTGCCTACTTCCGACAAGCAAAGAATGGTCTCTATATACGTATGGCCCTTGTGAAACTCTTGCTACTTGGTTGGTGA 1206 40.71 MAASSSLMSHSLQAHASPETAIKCCKGYMYGNLCSSYSRIGYSKSKFLTSPKFLHNDNSTKWEHIEKCPTRNEIWCRAVEIENSVSPFVSKKFELDDVIEAQQFDREILNYIFEVALDMEKIEKSSSKSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKKAAATASIPIINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYKDVKIYFVSPDVVKMKDDIKDYLTSQNVKWEECDNLMEVASECDVVYQTRIQRERFGERIDLYEQARGKYIVDKNVLKVMQRHAVVMHPLPRLDEITVDVDEDPRAAYFRQAKNGLYIRMALVKLLLLGW 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26419346 26424325 - PI0016137.2 Cmetu06g0270 357932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0270 401 Gene3D Aspartate/ornithine carbamoyltransferase 226 385 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cmetu06g0270 401 FunFam Aspartate carbamoyltransferase 2 230 385 - -
Cmetu06g0270 401 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 95 398 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cmetu06g0270 401 FunFam Aspartate carbamoyltransferase 97 229 - -
Cmetu06g0270 401 Gene3D Aspartate/ornithine carbamoyltransferase 98 393 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cmetu06g0270 401 PRINTS Aspartate carbamoyltransferase signature 357 362 - -
Cmetu06g0270 401 PRINTS Aspartate carbamoyltransferase signature 171 180 - -
Cmetu06g0270 401 PRINTS Aspartate carbamoyltransferase signature 379 393 - -
Cmetu06g0270 401 PRINTS Aspartate carbamoyltransferase signature 225 242 - -
Cmetu06g0270 401 PRINTS Aspartate carbamoyltransferase signature 317 326 - -
Cmetu06g0270 401 PRINTS Aspartate carbamoyltransferase signature 131 153 - -
Cmetu06g0270 401 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 245 396 IPR006131 GO:0006520|GO:0016597|GO:0016743
Cmetu06g0270 401 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 353 362 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cmetu06g0270 401 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 363 386 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cmetu06g0270 401 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 226 237 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cmetu06g0270 401 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 141 160 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cmetu06g0270 401 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 141 148 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cmetu06g0270 401 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 97 238 IPR006132 GO:0006520|GO:0016743
Cmetu06g0270 401 Hamap Aspartate carbamoyltransferase [pyrB]. 95 400 IPR002082 GO:0004070|GO:0006207
Cmetu06g0270 401 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 91 398 - -
Cmetu06g0270 401 NCBIfam aspartate carbamoyltransferase 97 398 IPR002082 GO:0004070|GO:0006207
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0270 K00609 - - csv:101220705 766.148
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00492 . . . . . . . . . . Sed01g2981 . . . . . . Cpe14g00722 . Bhi11g00591 Tan01g1733 Cmetu06g0270 . . . . . . . . . . . . . Chy06g01834 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006067 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 2 1 1 0 1 3 1 1 1 2 0 2 6 1 37