Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0369 ATGTCAGGTCCTCAATGCTGTTCAAACCCACCAACTCTAAACCCCAGCAGCGGCGCTGGCCACATCGAACAACTCGGCGGCCTTACCACCTACGTCTCCGGCTCCCCTGACTCCAAACTCGCTGTCCTTTTTATTACCGATGTCTACGGATTTGAAGCTCCACTTTTAAGGAAGCTAGCAGATAAGGTTGCAGCTGCTGGGTTCTTTGTGGTTGCTCCTGATTTCTTCAATGGAGATCCATTTGTCCCAGATGATGCTAATAGGCCAATTCGGGTTTGGTTACAAGATCATGGGCCTGACAAGGGTTTTGATGATGCGAAACCAGTAGTTGAAGCTCTGAAAAACAAAGGTATCTCAGCGATTGGAGCCGTAGGCATTTGCTGGGGTGCCAAGGTTGTGGTTGAACTTGCAAAAGTGGAGTTGATTCAAGCTGCCGTGTTGCTACATCCTTCGTTTGTCACTGTCGATGACATCAAAGGGATCAAAGCTCACATTTCGATACTAGGAGCGGAGATTGATCATATGTCTCCTCCAGAACTCTTGAAACAATTTGAAGAAATCTTGTCTGCAAAGCCTGAGGTTGACGGGTTCGTAAAGATATTTCCAAAGGTTTCTCATGGGTGGACTGTGAGGTACAATGTGGAAGATGAAGAGGCTGTCAAATGTGCAGATGAAGCTCATGAGGACTTGTTGGCTTGGTTTACTAAGTATGTTAAATAA 720 46.25 MSGPQCCSNPPTLNPSSGAGHIEQLGGLTTYVSGSPDSKLAVLFITDVYGFEAPLLRKLADKVAAAGFFVVAPDFFNGDPFVPDDANRPIRVWLQDHGPDKGFDDAKPVVEALKNKGISAIGAVGICWGAKVVVELAKVELIQAAVLLHPSFVTVDDIKGIKAHISILGAEIDHMSPPELLKQFEEILSAKPEVDGFVKIFPKVSHGWTVRYNVEDEEAVKCADEAHEDLLAWFTKYVK 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4456143 4459610 + PI0001852.1 Cmetu06g0369 358031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0369 239 Gene3D alpha/beta hydrolase 23 237 IPR029058 -
Cmetu06g0369 239 PANTHER DIENELACTONE HYDROLASE 1 238 - -
Cmetu06g0369 239 Pfam Dienelactone hydrolase family 30 237 IPR002925 GO:0016787
Cmetu06g0369 239 FunFam Carboxymethylenebutenolidase homolog 22 237 - -
Cmetu06g0369 239 SUPERFAMILY alpha/beta-Hydrolases 29 237 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0369 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0866 Cmetu-Chr6:4453106 Cmetu06g0369 Cmetu-Chr6:4456143 8.70E-36 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g418 . . Bda03g01296 . . . . . . . . . . . Sed12g0894 . . Bhi01g00867 Tan10g0901 Cmetu06g0369 . . . Lcy11g1493 . . . . . . . Cone14ag0813 . . . Lsi05g01463 . . Cme06g00653 . . . . . . Bma02g00701 . . . . . . . . . . . . . . . . . Cla05g00585 Cam05g0643 Cec05g0652 Cco05g0647 Clacu05g0637 Cmu05g0605 Cre05g0674 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002887 1 2 1 1 0 2 1 2 2 1 2 2 1 2 1 1 2 2 1 2 1 4 1 4 3 2 1 2 2 5 54