Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0416 ATGGGCAAGCAAGGGCCTTGTTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGGCCTCCAGATAAGCCAGTATTGTGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAACTCTAGCAAACTACACCCCTCTTCATGCACGGGCGGATCCTGATGAGTTTGAGGATAAAAGGATCTATAGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGACTTGTGGTTGGGGTTATTCCTGATCACGTTCAGAGCTTTCACAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGCACAGATGCTAGTGATCTGACAGGTCCCTCACAATCAACAGCGTGGGAGGCAATGGTGCCTTCTAGAAAGAGAACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAACAGTCTTACTTTTCTGGATCTTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCGATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCGAGTTCAATTGCTCGAGAAGAGGAATCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTTTAAATGAGGTTCATTCAGAGTCGACCATCCTTCCTGTACATTATGAAACTCAGAACAAGTTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTACTGGACAAGGGTTCTTGAATGAGCAAATTAGAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCGCAATTCCCCTCTCTGTAATATGGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAAAGCCAGCAAGAATTGATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATTGCATGTTTGAAAGTCCTCAGTTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCCTTCCGGGTGCAAAAAGAGAAGACTGCAAGACTTTGAGTAGGCTGGTGTTGTTGGATTTGTCAAAATCAAAATGGGTGGAACGATATAATTTTCTCAAGAAATGCAGTAGTGGAGAGTCTGTCCAAGGTTTTGCTGCTGCATCAAGTAGCCTTATGAATGGCAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACCAGGACGGCAATGAAGAGTCCCAAAAGGGTGATGGCGAAGACAAGCATGGAAAGCAAGGAACTTGTTGACAGCGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCGCTGCATTTTGATGAGGATAGTTCTGACCAAGATCTCCTGCTGGATGTGAGGTCAAACAGTTCCTTTCCACAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTTGTTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1620 43.64 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEFEDKRIYRWKNLSMCKNKEVKLLKRKQYQDNGLVVGVIPDHVQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESTILPVHYETQNKFVNFSTLGIGRKHSTGQGFLNEQIRRDRPQSERMQALGNRNSPLCNMDLTDILNFREFTKQLTSESQQELMKYLPSVDTEELPDSLNCMFESPQFKENLNSFKQLLTEGVFDFSLPGAKREDCKTLSRLVLLDLSKSKWVERYNFLKKCSSGESVQGFAAASSSLMNGKRVLDGQNKKLSETRTAMKSPKRVMAKTSMESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFVAQQASNSSSSVNLRLMHR 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29068628 29076037 + PI0022236.1 Cmetu06g0416 358078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0416 539 Gene3D - 289 377 IPR038108 -
Cmetu06g0416 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Cmetu06g0416 539 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cmetu06g0416 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cmetu06g0416 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cmetu06g0416 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cmetu06g0416 539 Gene3D - 3 83 IPR013088 GO:0006355|GO:0008270
Cmetu06g0416 539 MobiDBLite consensus disorder prediction 110 148 - -
Cmetu06g0416 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 531 IPR044589 -
Cmetu06g0416 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cmetu06g0416 539 MobiDBLite consensus disorder prediction 104 151 - -
Cmetu06g0416 539 Pfam Asx homology domain 287 368 IPR028020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0416 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3254 Cmetu-Chr4:33234882 Cmetu06g0416 Cmetu-Chr6:29068628 9.20E-196 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0192 . 108 359 C2C2-Gata Transcription Factor Family AT5G25830 58.5 1.8e-69 260.0
Cmetu07g0573 . 15 297 C2C2-Gata Transcription Factor Family AT5G66320 52.2 8.1e-65 244.6
Cmetu04g1399 . 104 267 C2C2-Gata Transcription Factor Family AT4G36240 54.2 1.5e-41 166.8
Cmetu03g0192 . 110 359 C2C2-Gata Transcription Factor Family AT4G32890 50.5 2.3e-58 223.0
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.7 1.9e-137 486.5
Cmetu04g3254 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.9 1.9e-134 476.5
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.5 1.4e-118 423.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8008 PF13919 ASXH 2.60E-09 No_clan Cmetu TF