Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0579 ATGCCGGAAGACACCGTTCCGATAGACTATGTAATGGAAGCCGCCTCAGGACCTCACTTCTCTGGCCTCCGACTCGATGGACGTCTCGCCTCTCCCCCGTCTTCCTCAACTTCCTCTCCGGCTCACCGCTCTTCTTTTTCCTCTTCCTTTGCACAGGCCGATACCAACTCTCCTAAACAGCCCTTTGTCATCGGTGTTTCTGGAGGTACCGCTTCTGGGAAGACGACGGTGTGTGACATGATTATCCAGCAACTTCATGATCACAGGGTTGTGCTGGTCAATCAGGATTCGTTTTACCGCGGGTTGACAGCTGAGGAACTAGAACGCGTACACGAGTATAACTTTGACCATCCTGATTCTTTTGACACCGAGCAGCTTGTAGATTGTATCGAGAAGCTAAAGAGTGGCCAACCTTACCATGTCCCAATTTATGATTTTAAAACTCATCAACGCTGTGTAGATAGTTTCCGACAGGTCAATGCATCTAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAAAGAGTCCGCAATCTGATGAATATGAAGATATTTGTTGACACAGATCCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACGGTAGAAAGGGGCAGGGACATTAACTCTGTTCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCATCAAAGAAGTACGCTGATGTGATCATACCACGTGGTGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACTAAGTTAGGCCAGCATGACCTATGCAAAATATATCCCAATGTTACTGTCATTCAGTCAACATTTCAGATAAGAGGCATGCATACATTAATTCGAGATCGGGACATTTCAAAGCATGATTTTGTATTCTATTCAGATCGACTTATTCGTCTGGTTGTGGAGCACGGCCTTGGCCATTTGCCATTTACTGAAAAACAAGTGATCACTCCTACGGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATTGTTCGGAGTGGTGAAAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAATGGGAAGCAGCTGATATACGAGAAATTACCCTCTGATATATCAGAGCGACATGTCCTGCTCCTAGATCCCGTTCTTGCTACTGGCAACTCAGCTAATCAAGCAATTGATCTACTCATACAAAAGGGAGTTCCAGAAGCGCACATCATATTCCTCAACTTGATCTCTGCCCCTGAGGGAATTCACTGTGTTTGCAAACGCTTCCCATCCTTGAAAATTGTCACTTCTGAGATCGATGTTGGATTGGACGAGAATTATCGTGTCATACCCGGCCTAGGTGAATTTGGTGATCGTTACTTCGGTACCGATGATTAG 1449 44.38 MPEDTVPIDYVMEAASGPHFSGLRLDGRLASPPSSSTSSPAHRSSFSSSFAQADTNSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQPYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPSDISERHVLLLDPVLATGNSANQAIDLLIQKGVPEAHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVGLDENYRVIPGLGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16813935 16823421 - PI0011502.1 Cmetu06g0579 358241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0579 482 ProSiteProfiles UvrC family, homology region profile. 167 250 IPR001162 GO:0009381
Cmetu06g0579 482 MobiDBLite consensus disorder prediction 30 56 - -
Cmetu06g0579 482 NCBIfam uridine kinase 60 261 IPR000764 -
Cmetu06g0579 482 Gene3D - 265 480 IPR029057 -
Cmetu06g0579 482 FunFam Uridine kinase 58 264 - -
Cmetu06g0579 482 FunFam Uridine kinase 265 480 - -
Cmetu06g0579 482 CDD PRTases_typeI 338 453 IPR000836 -
Cmetu06g0579 482 PRINTS Uridine kinase signature 91 102 - -
Cmetu06g0579 482 PRINTS Uridine kinase signature 207 218 - -
Cmetu06g0579 482 PRINTS Uridine kinase signature 193 203 - -
Cmetu06g0579 482 PRINTS Uridine kinase signature 61 78 - -
Cmetu06g0579 482 PRINTS Uridine kinase signature 136 151 - -
Cmetu06g0579 482 PRINTS Uridine kinase signature 229 242 - -
Cmetu06g0579 482 CDD UMPK 63 261 IPR000764 -
Cmetu06g0579 482 PANTHER URIDINE KINASE 38 391 - -
Cmetu06g0579 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524|GO:0016301
Cmetu06g0579 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 254 IPR027417 -
Cmetu06g0579 482 Gene3D - 57 264 IPR027417 -
Cmetu06g0579 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Cmetu06g0579 482 MobiDBLite consensus disorder prediction 23 56 - -
Cmetu06g0579 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0579 K00876 - - csv:101207261 936.021
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0408 Cmetu-Chr1:9837635 Cmetu06g0579 Cmetu-Chr6:16813935 7.20E-208 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1736 . 33 189 PRT Gene Family AT1G80050 78.3 4.6e-66 247.7
Cmetu06g2098 . 32 182 PRT Gene Family AT1G80050 77.5 2.5e-64 241.9
Cmetu09g1236 . 30 189 PRT Gene Family AT1G80050 68.1 7.8e-58 220.3
Cmetu03g0036 . 105 254 PRT Gene Family AT1G80050 70.7 9.5e-56 213.4
Cmetu03g1736 . 1 148 PRT Gene Family AT5G11160 79.7 8.4e-63 236.9
Cmetu09g1236 . 8 145 PRT Gene Family AT5G11160 76.1 1.7e-55 212.6
Cmetu06g2098 . 10 147 PRT Gene Family AT5G11160 74.6 1.1e-54 209.9
Cmetu03g0036 . 81 220 PRT Gene Family AT5G11160 72.9 1.1e-54 209.9
Cmetu03g0036 . 76 256 PRT Gene Family AT1G27450 82.9 2.6e-81 298.5
Cmetu06g2098 . 6 182 PRT Gene Family AT1G27450 75.7 8.9e-74 273.5
Cmetu09g1236 . 7 165 PRT Gene Family AT1G27450 76.1 1.2e-67 253.1
Cmetu03g1736 . 11 183 PRT Gene Family AT1G27450 68.8 4.0e-66 248.1
Cmetu11g1361 . 68 558 PRT Gene Family AT2G16570 84.4 4.4e-241 830.9
Cmetu11g1361 . 73 558 PRT Gene Family AT4G34740 85.4 1.2e-241 832.8
Cmetu11g1361 . 30 531 PRT Gene Family AT4G38880 70.9 8.8e-199 690.3
Cmetu03g0036 . 76 256 PRT Gene Family AT1G27450 82.9 2.6e-81 298.5
Cmetu06g2098 . 6 182 PRT Gene Family AT1G27450 75.7 8.9e-74 273.5
Cmetu09g1236 . 7 165 PRT Gene Family AT1G27450 76.1 1.2e-67 253.1
Cmetu03g1736 . 11 183 PRT Gene Family AT1G27450 68.8 4.0e-66 248.1
Cmetu03g1736 . 33 189 PRT Gene Family AT1G80050 78.3 4.6e-66 247.7
Cmetu06g2098 . 32 182 PRT Gene Family AT1G80050 77.5 2.5e-64 241.9
Cmetu09g1236 . 30 189 PRT Gene Family AT1G80050 68.1 7.8e-58 220.3
Cmetu03g0036 . 105 254 PRT Gene Family AT1G80050 70.7 9.5e-56 213.4
Cmetu06g2098 . 6 99 PRT Gene Family AT4G22570 88.3 1.9e-44 175.3
Cmetu09g1236 . 6 104 PRT Gene Family AT4G22570 81.8 7.2e-44 173.3
Cmetu03g0036 . 80 172 PRT Gene Family AT4G22570 80.6 1.8e-39 158.7
Cmetu03g1736 . 11 100 PRT Gene Family AT4G22570 77.8 5.0e-37 150.6
Cmetu06g2098 . 7 98 PRT Gene Family AT4G12440 88.0 2.3e-41 164.9
Cmetu09g1236 . 1 96 PRT Gene Family AT4G12440 83.3 1.2e-40 162.5
Cmetu03g0036 . 76 171 PRT Gene Family AT4G12440 79.2 5.4e-38 153.7
Cmetu03g1736 . 1 148 PRT Gene Family AT5G11160 79.7 8.4e-63 236.9
Cmetu09g1236 . 8 145 PRT Gene Family AT5G11160 76.1 1.7e-55 212.6
Cmetu06g2098 . 10 147 PRT Gene Family AT5G11160 74.6 1.1e-54 209.9
Cmetu03g0036 . 81 220 PRT Gene Family AT5G11160 72.9 1.1e-54 209.9
Cmetu03g0725 . 1 186 PRT Gene Family AT1G71750 64.0 4.6e-68 254.6
Cmetu01g0408 . 16 468 PRT Gene Family AT1G55810 85.4 2.7e-225 778.1
Cmetu06g0579 . 19 482 PRT Gene Family AT1G55810 73.3 3.3e-199 691.4
Cmetu01g0408 . 65 467 PRT Gene Family AT3G27440 77.2 1.7e-184 642.5
Cmetu06g0579 . 80 482 PRT Gene Family AT3G27440 75.4 9.4e-180 626.7
Cmetu06g0579 . 1 482 PRT Gene Family AT3G27190 86.3 2.7e-247 851.3
Cmetu01g0408 . 3 467 PRT Gene Family AT3G27190 74.2 1.6e-207 719.2
Cmetu08g1944 . 3 273 PRT Gene Family AT3G53900 57.2 7.1e-81 297.7
Cmetu01g0408 . 1 468 PRT Gene Family AT4G26510 84.5 5.3e-232 800.4
Cmetu06g0579 . 11 482 PRT Gene Family AT4G26510 75.2 2.2e-209 725.3
Cmetu06g0579 . 1 482 PRT Gene Family AT5G40870 86.5 3.6e-247 850.9
Cmetu01g0408 . 3 470 PRT Gene Family AT5G40870 73.4 2.8e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61