Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0652 ATGGCTTCTTCCATCGCTCTCCGAAGGCTTGCCGCTTCCTCTGCAACTAAGCTTTTCAACCCTGTTCGCTCCGCCTCTGTTGGTCGTTCTTTCAACACCAATGCTCAAATGACCAACTACGACGATGACGACCGCTCTCTTGATGTCGACCGACGCTCTGACCGCTCCCTCTCTCGTTCTCGTGATCGCTTCCCTGGTTTCGGAGATGTGTTCGATCCATTTTCTCCGACTAGGAGCCTAAGCCAGGTGCTTAATCTGATGGATCAGTTCATGGAGGATCCATTTCTGGCAGCATCACGAGGAGTAGGAGCAGGATCAAGGAGGGGCTGGGACGTGAAAGAAGACGACAACGCTCTATATCTACGAATGGACATGCCAGGACTTGGCAAAGATGATGTGAAGGTGAGTGTGGAGCAGAACACACTGATCATCAAAGGAGAGGCAGCGAAAGAATCCGAAGACGAAGAAGATCGTAGACGATTCTCGAGCAGACTGGACTTGCCTTCGAATCTGTACGAATTGAATTCGATCAAAGCAGAGATGAAGAATGGGGTGCTGAAAGTGGCAGTGCCGAAGGTGAAGGAAGAAGAAAGAAGGGATGTGAGGCATGTTACTGTTGAGTAG 624 50.32 MASSIALRRLAASSATKLFNPVRSASVGRSFNTNAQMTNYDDDDRSLDVDRRSDRSLSRSRDRFPGFGDVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVKEDDNALYLRMDMPGLGKDDVKVSVEQNTLIIKGEAAKESEDEEDRRRFSSRLDLPSNLYELNSIKAEMKNGVLKVAVPKVKEEERRDVRHVTVE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28617318 28619613 - PI0028850.1 Cmetu06g0652 358314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0652 207 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 22 201 IPR044656 -
Cmetu06g0652 207 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 101 207 IPR002068 -
Cmetu06g0652 207 MobiDBLite consensus disorder prediction 36 60 - -
Cmetu06g0652 207 MobiDBLite consensus disorder prediction 41 60 - -
Cmetu06g0652 207 CDD ACD_sHsps-like 111 192 - -
Cmetu06g0652 207 Gene3D - 67 206 IPR008978 -
Cmetu06g0652 207 Pfam Hsp20/alpha crystallin family 111 206 IPR002068 -
Cmetu06g0652 207 SUPERFAMILY HSP20-like chaperones 77 199 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0652 K13993 - - csv:101219106 315.849
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0652 Cmetu-Chr6:28617318 Cmetu10g0577 Cmetu-Chr10:17962998 2.00E-18 dispersed
Cmetu06g0300 Cmetu-Chr6:28613946 Cmetu06g0652 Cmetu-Chr6:28617318 1.00E-102 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g533 . . . Bda08g00575 . . . . Cmo06g00800 Cmo16g01193 . . . . Sed04g1717 . . Bhi11g00196 Tan01g2027 Cmetu06g0652 . . . . . . . . . . . . . . . Lsi07g01303 . . Cme06g02574 . . . . . . . . . . . Cma06g00780 . Car06g00694 . Cpe08g00743 . . . . . . . . . . . . . . . . Csa03g00277 Chy06g02045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54