Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0678 ATGGCAACCTTAATGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATCAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTAACAGACATGGATGCCAAAGTAAAAGCAATGATCAAACTCATTGAAGAAGATGCAGACTCCTTTGCCAGAAGAGCAGAAATGTACTATAAGAAACGTCCAGAGCTTATGAAATTAGTTGAGGAATTCTACCGAGCCTACCGTGCTTTAGCTGAAAGATATGACCATGCAACTGTGGAACTTCGCCATGCACATAAAGCCATGGCTCAAGCCTTTGACAACCAAATGCCTCCTTTTATGTTTTCCGATGAGTCTTCTGTTTCTGAAGCTGAATCCCACACACCAGAAATCCACCTCCCAAACCATGCACTGCATGTCAAAGATGAATTGCACAAGGAATCAGGGAGTTCTTCGTCAACAAACCAACATCCATTAAGAATGAAAGGGGATAGTGCTGGGGAATCTAATTCTCGTGCAAGTAAAGGGGGTCTGAAACAGCTCAATGAGATGTTTGCATCAAGAAAAAATGTGCCCGAAACTTTAGAGGTTAGCGAGGGAAGCATTGGAACGCAATCAGTTTTTCATGAAGGCGAATTTGATCCTTCTCAATTATCAAGGCAGATTAATGATCACGACTCTCAGGTCCTGTGCGAGTCAGTCTCAGAAAGTGATGAAAAATTGGATGCTGAACTTCAAAATTTAAGAAAAAAACTGAATCAGATGGAAGCTGAAAAGGAAGCTTTCTTTCTCAAATACCAGAATTCTTTGGAGAAGTTATCCAGCCTAGAGAAAGAACTTAGTTCTGCTCAAAAAGATGCTGGTGGACTTGACGAAAGAGCAAGCAAAGCTGAAATTGAAATAAAAATATTGAAGGAAGCCCTTCTAGATTTGAAAGCAGATAAGAATGCTGGCCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCTTAGAAAAGCTATTAGCTGTAGCCCAACAAGATGCTGAAGGACATAATGAGAGAGCTGCTAAGGCAGAAATTGAAGCTCAGAACCTTGAGCAACAACTTTCCAGATTAGCATCTGAAAAGGAGGTCAGTCTTCTTCAGTATGAGCAATGCCTAAAGAAGATATCTGCTTTAGAGAACAAAATCTCTCTTTCTGAAGATTATGCAAGGATGCTTGATGAACAAATGAATAGTTCAGAAGCTGAAGTGAAAGCACTGAAGAGATCTCTAGATGAATTGAATGAAGAGAAGGAAATCGCATCTCGCAATTATGAGCAGTGCTTGGAGAAAATTTCCAAGATGGAAACTGAAATATCTTATGCTCAAGATGATGCCAAACGTCTGAAAGGTGAACTTGTGACTGCTAATGCAAAACTGGAGACAACAGAAGAAAGGTGTGCTCATTTGGAGAAGTCGAACCATTCACTTCAGTTCGAGGCAGACAGACTTGTACAGAAGATTGCTATTAAGGATCAGGAGCTTGCTGAAAAGCAAAATGAGTTGAAAAAATTGCATAATTTAATGAATGAGGAGCAGTCACGATTTGTACAAGTCGAGAACACTCTTCACACTCTGCAGAAGTTACATTGTCAATCTCAGGAGGAGCAGAGAGCTCTAACCTTGGAGCTTAAAAATGGTCTCAGGATGCTGAAGGATTTGGATATATGCAAACATGGCATGGAGGAAGAGCTTCAACGAGTTCAGGATGAAAACAAAATGTTGAATGAATTGCATTTTTCTTCCAATACTTCAATGAAGAATTTAGAGGATCAATTATCTGGCTTGAAGGAGATAAAAGAGAAGCTTGAAGAGGTGGTTTCCCAAAAAGAAGCGCAGAGCAACTTCCTTGAGAAAGAAATCCATCATTTGAGAGAAGAAATTAAAGGCTTGAGTGGAAGATACCAGGGCATAATGAGACAATTGGAGGCAGTAGGATTGGATCCTCACTCCCTCGAATCCTCTGTGAAAGAATTTCAGGAGGAAAATGCCAAGCTGAGGGAGGCCTGTGAAAAGGACAGAAACAAGATCGAAGCACTTTATGAAAAACTCAGTTATATGGATGAACTTGCAAAGGAAAATTCGAATCTCAAGGTATCTCTGGCTGAATTGAATGCTGAACTGGAGAAGATAAGGGAGAAAGTCAAGGAATCCCAGGAGCTTTCCCAATTTACCCAGGGAGAAAAAACTGCTCTTGTTGCGGAGAAATCTTCCTTGTTTTCACAACTGCAGAATGTAACTGAGAATATGATGAAACTTTTAGAGAAGAACACATTGCTGGAAGACTCCCTATCTAGTGCAAATAAAGAGCTTGAAGGATTAAGGGCAAAAACAAAGGGCTTAGAAGAATTTTGCCAGTTGCTGAAGGATGAGAGATCCAATCTTTTGAATGAAAGAGGTGCACTGGTGGCTCAGCTTGAAAACATTGAACTGAGACTTGGAAACCTGGAAAAGAGGTTTACAAATCTAGAAGAAAAATATGCTGATCTGGAAAATGACAAAGATTCTGCCTTACATCAAGTAGAAGAATTGAGATTTTCCCTTTTCATGGAAGAACAAGAGCATACAAGTTACAAGCAGTCGACTGAGGCCAGACTTGCTGGTTTGGAGAACAATGTCCATAAACTACGAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGAGCTACTAGACAAGGCTGTGAATGCCCAGGTTGAAATCTACATATTGCAGAAGTTTGTTGAGGATTTGGAAGAGAAAAATTTTTCTTTGCTTATTGAATGTGAACAATATGAAGAGGCATCCAAGTTATCAGATAAACTTATTGCTGAATTGGAAGGTGAAAATCTTGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATCGATAAATTAAGAGCAGGAATCCGTAAGGTATTAATGGCACTTCAAATCGATCAAGATTTGGATATTTTGGCCAGAATTGAGGATTTGAAAGCTTCCGTGTTCAAAAACAAGGACAAGAAGCAGCAACTGTTAGTTCAGAACTCGGTTTTATTAACTCTTCTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTCTGTCAGAGAAAGAGAACATTGTGCAGGAGTTAAAGATCATGAAGGGCCAACTAGCAATGCATGAAAATGACAAGCATGAGCTTCTGAAGACGAAAAACCAGTTGATGATGCAAGTTAGCCAGTGGGAACAGCATGAGCTACTGCTGAAGGCTGAGATTGAAACTCTAAATGAGAAGCTAATAAATCTCCAAGGGGCCTGTCTTATGCTGGAAAAGGAAAATTTTAATGTTGCTGAAGAAAAAAAAACGTTGCTGAAGAAATTTCTGGACCTTGAAGAGGACAAGAATATTACTCAACAAGAGGAGCAAAATTTAATCATCCAGGAAGTGATTGCTTTCAACATTCTATCATCAATTTTTGAAAGCTTCAAAACCGAGAAATTCTTGGAAATAGAAAAGCTTGTTCAAGATATATGTCATCTCCAAGTGGTTAATTCTGATTCAAGGGAGGAATTTGGAAAGTTGGCAGAGAAATTTCAGTTGAAGGAAGTGGAAAATTTGCATTTAAATGGATCTGTAGAGAAATTGTCCAAGGAGCTACATGAAGCAGAAGACTTGAACGATGAACTTAACTATCAAATTTTACTTGGAAATGATTTTCTGAGGCTAAAGGCCCAAGAGCTTTCTGAAACAGAAGCGGAGCTTAAAATTTCTCAAAATTTCAACATGAAATTGTCTGAGACAGTTGAGGAGCTCAAGATGGAAGGTAAGGAATCCATGATGATCAGACACAACCTACAGAATGAGAATCTTCAACTTTCTGAAAAGTGCTTAAGCCAGGAGAATGATATTCAATGCCTCTGTGAAGTAAATATAAATTTAAAATCTGAAGTTGATTTGTTGAATGAGGAGGTTGGGAAATGCAAAATGCGAGAGGAGTGTCTGAGTTTAGAACTACAGGAAAGAAGAGATGAATTTGAGCTCTGGGAGGCTGAAGCCACGACATTTTATTTTGATCTTCAAATCTCATCGATAAGGGAGGTTTTATACGAACATAAGGTTCATGAACTTGCACAGGCTTGTGAAAATGCTGGGGATGAGAATGCTGCAAAAACTATGGAGATTGAACAACTCAGAGAAAGAGTGAGTTTCCTAGAAACTGAAATCAGAGAAATGGAGTCGCAGTTGTCTGCATATAAGCCCGCCATAGCTTCTCTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGACTAGGGATACCTGTAGAGGTTTTATAGGAGAAGAGGGCGAGGAAACCACAATTCATGTTGATCACAGGATCTGTAATGGTCACAAAGATGAGATATTGGATTTACAGAAGATTGGGGCCATGATAAAAGCAGTTGAGAAGGCTGTGATCAAGGAAAAGGAAAAACTCAACAAAGAAGCTACTGACAAACATGTCAAAGACTTCAAATCAGAAGGAACCTCCCATTTAGTAGATGGAATTACTAGTAATCTGAAGGCAAGAAAGAAGAAACCTGACAATGGAATATTGATGAAAGATATTCCATTGGATCATGTATCAGATAGTTCTTTCCAGAGAAGAAGCAAAAGGGAAAGTAGTGAGACCAATGATCAAATGCTTAAGTTGTGGGAAACTGATGAGCAGGATTGTGACCAGAATTTGATTGATAGCTCACCACCACAAAGCCCGCCTGACCCACAAATCGAGTACCCGCACTTGGAAATTGTAGAACATAAGAGTCCAGACTTTTCTTCAGAACTGCAAGCAGAGAAGGAGTTGAGCATTGATAGATTAGAACTATCACCCAGCATTAGAGAACGGATTCGAAGAGGCCGAAAAGGAAAGATTTTAGAGAGACTTGATTCAGATGTCGTTCAATTGACAGGTCTGCTAACAAGCGTTCAAGATCTGAAAAAGAGAATCGAAGTGAACACCCTTGAAATGGCCAGAAACAACGAATATGACACGGTCGAAAAACATATAAAAGAAGTTGAGGAAGCCATTTATCAGCAAGTAAATATGAATGGTCAACTGAAGCAGAATTTGGAACGCAGTCCCTCATCTTTCGAGCGAAGACCATCAGTTGAACTTGAAGCAACTGGAAACGTCCCCTTAAGCAAACTAACAGAGCAGGCACAAAGAGGATCCGAGAAGATAGGAAAACTACAGTTCGAGGTACAGAACATTCAGCGTGTTGTGCTGAAACTCGAAGCTGAGAAGAAAAGAAAAGGGAAGAACAGATTCTCCAAGAGTAAACCTGGTGTTATTCTGAGAGACTTCATCTACAGAAGCGGAAAACGAAGTGAAAGACGAAAGAAGCCGTGCTCTTGTGGATGCACAAGACCTACTACTCACGGAGACTGA 5406 39.64 MATLMHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATVELRHAHKAMAQAFDNQMPPFMFSDESSVSEAESHTPEIHLPNHALHVKDELHKESGSSSSTNQHPLRMKGDSAGESNSRASKGGLKQLNEMFASRKNVPETLEVSEGSIGTQSVFHEGEFDPSQLSRQINDHDSQVLCESVSESDEKLDAELQNLRKKLNQMEAEKEAFFLKYQNSLEKLSSLEKELSSAQKDAGGLDERASKAEIEIKILKEALLDLKADKNAGLLQYNQCLQKISSLEKLLAVAQQDAEGHNERAAKAEIEAQNLEQQLSRLASEKEVSLLQYEQCLKKISALENKISLSEDYARMLDEQMNSSEAEVKALKRSLDELNEEKEIASRNYEQCLEKISKMETEISYAQDDAKRLKGELVTANAKLETTEERCAHLEKSNHSLQFEADRLVQKIAIKDQELAEKQNELKKLHNLMNEEQSRFVQVENTLHTLQKLHCQSQEEQRALTLELKNGLRMLKDLDICKHGMEEELQRVQDENKMLNELHFSSNTSMKNLEDQLSGLKEIKEKLEEVVSQKEAQSNFLEKEIHHLREEIKGLSGRYQGIMRQLEAVGLDPHSLESSVKEFQEENAKLREACEKDRNKIEALYEKLSYMDELAKENSNLKVSLAELNAELEKIREKVKESQELSQFTQGEKTALVAEKSSLFSQLQNVTENMMKLLEKNTLLEDSLSSANKELEGLRAKTKGLEEFCQLLKDERSNLLNERGALVAQLENIELRLGNLEKRFTNLEEKYADLENDKDSALHQVEELRFSLFMEEQEHTSYKQSTEARLAGLENNVHKLREESRVSKEEIEELLDKAVNAQVEIYILQKFVEDLEEKNFSLLIECEQYEEASKLSDKLIAELEGENLEQQVEVEFMYNEIDKLRAGIRKVLMALQIDQDLDILARIEDLKASVFKNKDKKQQLLVQNSVLLTLLKQLSLESEELLSEKENIVQELKIMKGQLAMHENDKHELLKTKNQLMMQVSQWEQHELLLKAEIETLNEKLINLQGACLMLEKENFNVAEEKKTLLKKFLDLEEDKNITQQEEQNLIIQEVIAFNILSSIFESFKTEKFLEIEKLVQDICHLQVVNSDSREEFGKLAEKFQLKEVENLHLNGSVEKLSKELHEAEDLNDELNYQILLGNDFLRLKAQELSETEAELKISQNFNMKLSETVEELKMEGKESMMIRHNLQNENLQLSEKCLSQENDIQCLCEVNINLKSEVDLLNEEVGKCKMREECLSLELQERRDEFELWEAEATTFYFDLQISSIREVLYEHKVHELAQACENAGDENAAKTMEIEQLRERVSFLETEIREMESQLSAYKPAIASLREDVESLKHIVLPQTRDTCRGFIGEEGEETTIHVDHRICNGHKDEILDLQKIGAMIKAVEKAVIKEKEKLNKEATDKHVKDFKSEGTSHLVDGITSNLKARKKKPDNGILMKDIPLDHVSDSSFQRRSKRESSETNDQMLKLWETDEQDCDQNLIDSSPPQSPPDPQIEYPHLEIVEHKSPDFSSELQAEKELSIDRLELSPSIRERIRRGRKGKILERLDSDVVQLTGLLTSVQDLKKRIEVNTLEMARNNEYDTVEKHIKEVEEAIYQQVNMNGQLKQNLERSPSSFERRPSVELEATGNVPLSKLTEQAQRGSEKIGKLQFEVQNIQRVVLKLEAEKKRKGKNRFSKSKPGVILRDFIYRSGKRSERRKKPCSCGCTRPTTHGD 1801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3977015 3983799 - PI0022186.1 Cmetu06g0678 358340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0678 1801 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Cmetu06g0678 1801 PANTHER PROTEIN NETWORKED 4A 291 392 - -
Cmetu06g0678 1801 Coils Coil 593 641 - -
Cmetu06g0678 1801 Coils Coil 806 854 - -
Cmetu06g0678 1801 Coils Coil 397 529 - -
Cmetu06g0678 1801 Coils Coil 663 690 - -
Cmetu06g0678 1801 Gene3D - 532 702 - -
Cmetu06g0678 1801 Coils Coil 320 375 - -
Cmetu06g0678 1801 Coils Coil 229 312 - -
Cmetu06g0678 1801 Coils Coil 1018 1052 - -
Cmetu06g0678 1801 Coils Coil 915 935 - -
Cmetu06g0678 1801 MobiDBLite consensus disorder prediction 141 172 - -
Cmetu06g0678 1801 Coils Coil 943 963 - -
Cmetu06g0678 1801 Coils Coil 866 900 - -
Cmetu06g0678 1801 Coils Coil 1201 1221 - -
Cmetu06g0678 1801 Coils Coil 1369 1403 - -
Cmetu06g0678 1801 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Cmetu06g0678 1801 Coils Coil 1081 1101 - -
Cmetu06g0678 1801 Coils Coil 750 784 - -
Cmetu06g0678 1801 Coils Coil 558 585 - -
Cmetu06g0678 1801 Coils Coil 694 728 - -
Cmetu06g0678 1801 Coils Coil 1271 1291 - -
Cmetu06g0678 1801 SUPERFAMILY Tropomyosin 230 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0678 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0229 Cmetu-Chr5:19327037 Cmetu06g0678 Cmetu-Chr6:3977015 1.00E-132 dispersed
Cmetu06g0678 Cmetu-Chr6:3977015 Cmetu06g2202 Cmetu-Chr6:22817697 9.70E-32 dispersed
Cmetu04g1542 Cmetu-Chr4:31500131 Cmetu06g0678 Cmetu-Chr6:3977015 1.10E-12 transposed
Cmetu12g0969 Cmetu-Chr12:24756709 Cmetu06g0678 Cmetu-Chr6:3977015 1.50E-32 transposed
Cmetu01g2240 Cmetu-Chr1:23622443 Cmetu06g0678 Cmetu-Chr6:3977015 1.30E-213 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44