Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0694 ATGGGAGTTGTGACTGTTTCAAGCTCTGCAGCACGAACTCCTTTTGGGCTGGGTGCGAAATTTTCTAATCACAGTTCTACATTGAAAAGACCATCGATTGTTGCTTTTAAAGCAGACAAGCACACAAACACGACACTGGTCTCACCTCACGAGCAAGTAACACTGCCTGTGGAGAGTAATAACAGAAGCAAGAAAAGATCAGGAAAAACTAGCAAACCGTTGAAGAGAGTTAAAGCTGTCCTTATAGATGAAGCTACTCCATGTTCTCTGGATTTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATTTTCAAGCTTAGTCCTATGACAGAGGATTCTGATACGGAAAGTATAGATGGCAGATCAAGAAGAGGACAGCAAAGGAGCAAAAAATCAGACAAGAGACCAAGTGATGGCATTGTCAGGAACCAAACTAAGAGGATTAAGCGACTAGATCTCGATAAGAGGATTGCATTGAAAAATAAAAAGGAAGGCAAAGCGGTTGCTTTATTAAGGAAACAAAAAGATACCAAAAACGAAGCTGATGAGATTGATGGTCTGCGATTAGATCTTGAAAAGAGGATAGCATTGAAAAGTAACAAGGAAGGAAAAGCGGCTCCTTCATTAAGGAAACAAAAAGAAACTAAAAATGAAGATGATGAGATTGATAGGCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGCTTAGACTGGAAGAAAATGAAGATTCCTCCTGTTCTTCCTTCGTCAGAGCATATCCGTTTGTTCAAGTTGGTTCAACCAATGAAGGCACTTATTGAAATCCAAGAGGAGCTGCAGAAAGAGTTAGGAAGAGAACCAACTGAAGGAGAATTGGCAAATGCGACGAATATGAATGTAATTCAAATAAGGAGACAACTGGAGGTCGGTCGTGCTGCCAGAAATAAGCTCATTAAGCACAATCTACGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGGCCAAAATTTCAAGATCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCGATTGATCGATTTGAGCCAAAGAGGAAATTCCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATTCGGTCAATGACTCTGTCAAGCTTCACACGTGTCTCATTTGGACTTGATTCGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGAAGAGATAATTGCAAAAGTTGGCATCTCACCCGAGAGGTACCTAGAAGTAATGAGAGCTACAAAACCAGTTTACTCTCTCCATTCAAGGCACTCAACTACATCGGAAGAGTTGATCAATGGGATCACTGATGTAGAAGGCACGGGGGGTGACAACCGAAGGCAACCAGCTCTTCTGAGGCTTGCTTTAGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTTGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCTGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTGAAGCATCCTGCAAGAGTTGATTACCTTCGTCGGTATTTAATCTGA 1644 40.75 MGVVTVSSSAARTPFGLGAKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRSKKRSGKTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDTESIDGRSRRGQQRSKKSDKRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHIRLFKLVQPMKALIEIQEELQKELGREPTEGELANATNMNVIQIRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEIIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7877184 7881886 + PI0010377.2 Cmetu06g0694 358356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0694 547 MobiDBLite consensus disorder prediction 202 221 - -
Cmetu06g0694 547 PRINTS Major sigma-70 factor signature 364 372 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 PRINTS Major sigma-70 factor signature 507 522 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 PRINTS Major sigma-70 factor signature 522 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 PRINTS Major sigma-70 factor signature 340 353 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 PRINTS Major sigma-70 factor signature 486 498 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 Gene3D - 304 381 - -
Cmetu06g0694 547 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 473 546 IPR013324 -
Cmetu06g0694 547 Gene3D - 386 438 IPR036388 -
Cmetu06g0694 547 MobiDBLite consensus disorder prediction 111 145 - -
Cmetu06g0694 547 Gene3D - 260 303 IPR036388 -
Cmetu06g0694 547 MobiDBLite consensus disorder prediction 48 73 - -
Cmetu06g0694 547 NCBIfam sigma-70 family RNA polymerase sigma factor 309 535 IPR014284 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 Pfam Sigma-70 region 2 313 379 IPR007627 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 Gene3D - 470 547 IPR036388 -
Cmetu06g0694 547 Pfam Sigma-70 region 3 397 461 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 Pfam Sigma-70 region 3 268 308 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 394 450 IPR013324 -
Cmetu06g0694 547 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 231 380 IPR013325 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 148 546 - -
Cmetu06g0694 547 Pfam Sigma-70, region 4 482 535 IPR007630 GO:0003700|GO:0006352|GO:0006355
Cmetu06g0694 547 MobiDBLite consensus disorder prediction 113 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0694 K03093 - - csv:101208584 999.579
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0527 Cmetu-Chr3:3265807 Cmetu06g0694 Cmetu-Chr6:7877184 2.70E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g868 Blo06g01076 . . . . . . . Cmo16g00073 Cmo18g01330 . . . . Sed07g0818 . Cpe14g00055 Bhi01g01453 Tan01g0146 Cmetu06g0694 . Hepe07g0087 . . . . . . . . . . . Cone14ag0030 Cone15ag0032 . . . . . . . Bda15g00776 . Bpe12g00373 . . . . . Cma16g00070 Cma18g01301 Car16g00061 Car18g01217 Cpe09g00041 . . . . . . . . Cla05g00949 Cam05g1040 Cec05g1045 Cco05g1039 Clacu05g1031 Cmu05g0981 Cre05g1060 . Csa03g02199 Chy06g01254 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005753 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38