Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0787 ATGGCCGAATCCATGGAGGAAACCGCCCTTGTTGATGCCCAACCCACTCTCCCCACCTCCGACAAGAGACCCATTGAGATTCATGACGACAATCAACTTGCGGAGCCTCAATCGAGGAAGAAACCTCGGAATGGTTGCGACTTGGGTCCGAATCTCAGAAGGGTAGCTGAGATTGTGTTGGTTATGTCGACTATGACGGCTTTGCGTGGTGGGAAGAAGCCCACTGATGCTGAGGTTGGATTAATGGCTGAAGCTAGGGCTAAGTTGGCTCGGATTTGTGAAGGATTGGCTCCGAAGGATATTGTGGGAAGGGAGGGTATTAGTTCTTTGATTGAAGATTTGGGGCTCCATGGTAGGGATCAGAAGTTAGGGTTTCGAGGTCCTAGGTTGACGATAGCGGAGAAGTTGGCGCAGTCGAAGAAGAAGATGGAAGATTCCAAGAAATATGTCCCACCTCCGGGTTATGGACCCCATACAACTCAAAAAAATTTCAGTTCATCAGTTGAGAGCCGTGGGCCATTGCCTACAGTACGAGTGTTTCCCTCAGAAAAATCAGGTCCTGTCCCAGCTTCTGTGGGAGGTACTGCAGGTACTCTGCCTTCAGGTCATGGTTCTGTCGCTGGTCCTACTTCTATACAGGTTCAAGCGCAAATACCGAGCAATGAAGTCAGGTCACATATTATTTCAAGTGGATATTCTATTGGTCATCAAGGAATGGATTCTTCTTCACTCTTGCATGGCACTGAAAGACCATTAAATGGGGCATATGGATCTCAAATGCAAGTTAACTCTTTGGCAAATCATCCTCTGGCGAGTGCTCCATCGTGGTCTGCTCAAACTCAATCTGCTTTGACAGCTAAAGGTGGGCCAGAGCACAAGTTTCCCAATCATTCTGCTGTTAATGCTCAGGGAACCACAGACTCAAGAGCACTAAGATCGTCGTCTCAAGCTGCGAGGGACCAGAGCTTTAGACCTCCTATTTCACAAACTGGGACAGGAAATATTACTGGTTTGCAGCCGCCTTTACAAAGCATGAATTTTGTGCAAGGACCTTCACTTTCTAATAACCACAATGAAATTGTCAAAATTATTCAGAAGCTCTTACAGCCACAACTGCCCGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAGTTACCATTAATGAGATTGATACTGTACTTATATGTGATGCTTGTGAGAAAGGATATCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGCGAATGGCACTGCCCAAGATGTTTAACTATTAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAACCCGCCACCAAAATTATCGGTCAATACCGGTGGAATTCAGCCACTAGAGAAGAGATCAGGAGCCATAGAACAGAAGGCCAGTGCTGGTCAGTTGAAGTTAGTTTCTAATGGAGGTTCAGATTTGCCAACTCCTCAGCCTGCTGACTATGGAAGCGATGCCAATGAATCATCTGGTATCAAAATTCCAAATGTGGAAGAGATTCATGGAAATAATTTTTTACCAATTAGGAAAGACAGAGATGAGAAACCAATACCAACCTCATCGACTTCCTTGAATACCCCAGCCAAATCCTTGGGGCTGGTTTGTGAACCCTCTTCTGGTGAGTTATCAAGTGAAACATCTGCTCAGCCCATTAAAAGTTCTCAAACATCAATAGGTGATGATAAATCCTCAACGAAAGCAGAGCCTCCAGAAGAATCCCAAACAACGGCTGACAATTCTAGTATTCCTAAACCGCCTGACATTCCTCAAATTGTTGATCAGAAAATGGTTTCTGAAGGCCCAGAAATACCCTCCTCAACAACAAGTGCTCATGATTCTTCAAACGTGAAGAAAGATGGCCATGAAGTTCTGCAGGAGAATAATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGCCCGGTGCTTCTTCAAATGACTTGCATAATGTTGAATGGATTGGAGACCAATATCAGATTTTAGATATGAGGGCATATTACAAATCCTGTCGAGTTGATGGTGTGACATATAAAGTTGAAGAATTTGCTCTTTTTCAATCCAGCAACGGGAAATTGATGCCCTATAGGCTTCATTCCTTCAGCCATGAATATGAAAGTGGGTTGAAATGGGCTATTCTTAAGAAGTGTTACTTTTATGAGGACTTGCCAAAGGAAGTTGCCCATCTCCACCCGTGCTCCCCCGAAGAACATGAGGTATATACATCCGATGGCTTTATTTGTTTAGATCTGGGCTTAATTCGAGGACCATGTGAAGTTCTTTCTGTTGCCAAGTATAAAGAAGAACTTGAAAGACGAAAACGATTGGGTCCAGGAGAAGATAATGGAATAAAGCCAATGTTCCTGTGCAAATGGTTTTATACTGAAGCTAGCAAGGAATTTGTACCTTTTACTGGCGCCATTTGTGAAAACTACTCAGTGACGCAGTATGTGTGCCAATTGAAGGCACTCTATTGCTAA 2556 43.9 MAESMEETALVDAQPTLPTSDKRPIEIHDDNQLAEPQSRKKPRNGCDLGPNLRRVAEIVLVMSTMTALRGGKKPTDAEVGLMAEARAKLARICEGLAPKDIVGREGISSLIEDLGLHGRDQKLGFRGPRLTIAEKLAQSKKKMEDSKKYVPPPGYGPHTTQKNFSSSVESRGPLPTVRVFPSEKSGPVPASVGGTAGTLPSGHGSVAGPTSIQVQAQIPSNEVRSHIISSGYSIGHQGMDSSSLLHGTERPLNGAYGSQMQVNSLANHPLASAPSWSAQTQSALTAKGGPEHKFPNHSAVNAQGTTDSRALRSSSQAARDQSFRPPISQTGTGNITGLQPPLQSMNFVQGPSLSNNHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDTVLICDACEKGYHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTGGIQPLEKRSGAIEQKASAGQLKLVSNGGSDLPTPQPADYGSDANESSGIKIPNVEEIHGNNFLPIRKDRDEKPIPTSSTSLNTPAKSLGLVCEPSSGELSSETSAQPIKSSQTSIGDDKSSTKAEPPEESQTTADNSSIPKPPDIPQIVDQKMVSEGPEIPSSTTSAHDSSNVKKDGHEVLQENNVENFEASIINREQPGASSNDLHNVEWIGDQYQILDMRAYYKSCRVDGVTYKVEEFALFQSSNGKLMPYRLHSFSHEYESGLKWAILKKCYFYEDLPKEVAHLHPCSPEEHEVYTSDGFICLDLGLIRGPCEVLSVAKYKEELERRKRLGPGEDNGIKPMFLCKWFYTEASKEFVPFTGAICENYSVTQYVCQLKALYC 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26575192 26582117 + PI0020827.2 Cmetu06g0787 358449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0787 851 ProSiteProfiles Zinc finger PHD-type profile. 389 441 IPR019787 -
Cmetu06g0787 851 MobiDBLite consensus disorder prediction 158 172 - -
Cmetu06g0787 851 CDD BAH 700 830 - -
Cmetu06g0787 851 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 830 - -
Cmetu06g0787 851 SMART PHD_3 391 439 IPR001965 -
Cmetu06g0787 851 MobiDBLite consensus disorder prediction 273 338 - -
Cmetu06g0787 851 MobiDBLite consensus disorder prediction 624 643 - -
Cmetu06g0787 851 MobiDBLite consensus disorder prediction 137 209 - -
Cmetu06g0787 851 Gene3D - 680 846 IPR043151 -
Cmetu06g0787 851 MobiDBLite consensus disorder prediction 298 338 - -
Cmetu06g0787 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 453 IPR013083 -
Cmetu06g0787 851 SUPERFAMILY FYVE/PHD zinc finger 382 448 IPR011011 -
Cmetu06g0787 851 Pfam PHD-finger 392 439 IPR019787 -
Cmetu06g0787 851 MobiDBLite consensus disorder prediction 491 614 - -
Cmetu06g0787 851 ProSitePatterns Zinc finger PHD-type signature. 392 438 IPR019786 -
Cmetu06g0787 851 MobiDBLite consensus disorder prediction 562 608 - -
Cmetu06g0787 851 MobiDBLite consensus disorder prediction 1 48 - -
Cmetu06g0787 851 ProSiteProfiles BAH domain profile. 701 830 IPR001025 GO:0003682
Cmetu06g0787 851 MobiDBLite consensus disorder prediction 22 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0787 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g1829 Cmetu-Chr11:30442415 Cmetu06g0787 Cmetu-Chr6:26575192 3.30E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8042 PF00628 PHD 2.60E-08 CL0390 Cmetu TR