Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0798 ATGTCAGAAATGGCGAACGCAGATCCCGAAGGAATCGATGGAGTTCGTATGTCATGGAATGTTTGGCCACGTACCAAGGTTGAAGCCAGCAAGTGCGTTGTTCCACTCGCTGCGTCGATCGCTCCGATCCGTCATCACCCTGAGATCCCTACTCTTCCATATGCGCCTCTCCGTTGCAAGTCTTGCTCCGCCGTTCTTAACCCGTTTTCTCGTGTCGACTTCACCGCTAAGATTTGGATCTGCCCTTTTTGTTACCAGCGATGCCATTTTCCTCCTCATTATGCCATGATCTCTGAAACCCATCTGCCTGGCGAGCTTTATCCTCAGTATACCACTGTTCAATATGCTCTTCCTCAATCCACTCATCCTAATCCTGCTCTGGATTCAGCCCAACAGGCGAATCCCTCCCCGGTTTTCCTTTTTCTGCTTGATACTTGCATGATCGAGGAAGAATTGGGGTTTGTGAAATCGGAGCTTAAGAGGGCGATCGGGTTGTTGCCTGATAATGCGCTTGTTGGATTTGTTTCGTTTGGGACTCAGGTTCAGGTTCATGAATTGGGATTCTCTGATATGTCTAAGGTGTATGTGTTTCGGGGTACGAAGGAGGTTTCTAAGGATCAGGTTTTGGAACAATTGGGTCTTGCGGTTGGAGCGCGGAGAGTTGCTGGAGCTTATCAAAAGGGGGTCCAGAATGGATTCCCTAATTCGGGTGTTACACGTTTTTTGTTGCCTGCTTCTGACTGCGAATATACCCTCAATTCGTTGTTGGATGAACTTCAAACGGATCAATGGCCTGTTTCTCCTGGTAATCGGGCATCTCGGTGCACTGGAGTGGCATTAAGTGTTGCAGCAAGTTTGCTTGGAGCTTGTTTGCCTGGAACTGGTGCTCGAATTATTGCTTTGGTTGGTGGACCATGCACAGAAGGGCCTGGCACGGTAACTACAAAAAAAAAAAAAAAAAAGAGAATTTCTTTTCCTCGCTTCTCAGTAAAATTCTATGAAAGTCTTGCAAAACAACTGGTTGGCCAAGGCCATGTCTTGGATCTTTTTGCATCAGCACTTGATCAGGTTGGTGTTGCGGAAATGAAAGTGGCAGTAGAAAAAACTGGTGGCCTTGTTGTTCTAGCAGAAAGTTTCGGACATTCTGTATTTAAGGACTCTTTCAAGCGTGTGTTTGAGGAAGGAGAGCACTCTCTTGGTCTTTGCTTTAATGGCACCCTTGAGATCAATTGTTCAAAGGACATCAAGATTCAGGGCATAATTGGACCTTGCACATCTTTGGAGAAGAAAGGTCCTGCTGTTGCTGACACTGTTATTGGGGAGGGCAATACTACTATGTGGAAAATGTGTGGCCTTGACAAAAGCACTTGTTTGACAGTGTTTTTTGATCTTTCATCAAGTGATAGGTCAAGTGCTCCAGGAACTGCAAATCCACAGTTGTATTTGCAGTTTCTTACTAGTTATCAAGATCCTGAAGGTCAGTCAATGCTTCGGGTTACCACTGTCACTAGAAGATGGATTGACACAGCTGTTAGCTCGGAGGAATTGGTGCAAGGGTTCGATCAAGAGGCTGCTGCAGTTGTTGTGGCAAGATTAACTTCCTTGAAAATGGAGATGGAGGAGGGGTTCGATGCTATTCGGTGGTTGGATCGATCCTTGATTCGCCTCTGTTCTAAGTTTGGTGATTACCGGAAAGATGATCCATCTTCATTCACTTTAAATCCTTGCTTTTCTTTGTATCCTCAGTTCATGTTTAATTTGCGGCGTTCACAATTTGTACAGGTTTTTAACAACAGTCCAGATGAAACTGCATATTTTAGGATGTTGTTAAATAGGGAAAACATCACAAATGCTGCAGTGATGATTCAGCCGTCACTAATATCGTACTCATTCAATTCACTCCCTGCACCAGCATTGTTAGATGTTGCTTCCATTGCAGCTGATCGCATTCTCCTTCTAGATTCTTATTTCAGTGTTGTCATATTTCATGGAATGACAATAGCACAGTGGCGTAATATGGGATACCAAAATCAACCAGAACACCAAGCATTTGCACAGTTATTGAATGCTCCTCATGATGATGCCCAAATTATTATTCATGAGCGTTTTCCAGTGCCTCGTTTGGTTGTCTGCGATCAGCATGGTTCCCAGGCTAGATTCTTATTGGCAAAGTTGAATCCATCAGCAACATACAACAATGCTCAAGAAATAGCAGCCGGGTCAGATATCATATTTACAGATGACGTTAGTCTTCAAGTATTCTTTGAGCATCTTCAGAGGTTGGCTGTGCAATCTTGA 2298 44.34 MSEMANADPEGIDGVRMSWNVWPRTKVEASKCVVPLAASIAPIRHHPEIPTLPYAPLRCKSCSAVLNPFSRVDFTAKIWICPFCYQRCHFPPHYAMISETHLPGELYPQYTTVQYALPQSTHPNPALDSAQQANPSPVFLFLLDTCMIEEELGFVKSELKRAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGTKEVSKDQVLEQLGLAVGARRVAGAYQKGVQNGFPNSGVTRFLLPASDCEYTLNSLLDELQTDQWPVSPGNRASRCTGVALSVAASLLGACLPGTGARIIALVGGPCTEGPGTVTTKKKKKKRISFPRFSVKFYESLAKQLVGQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRVFEEGEHSLGLCFNGTLEINCSKDIKIQGIIGPCTSLEKKGPAVADTVIGEGNTTMWKMCGLDKSTCLTVFFDLSSSDRSSAPGTANPQLYLQFLTSYQDPEGQSMLRVTTVTRRWIDTAVSSEELVQGFDQEAAAVVVARLTSLKMEMEEGFDAIRWLDRSLIRLCSKFGDYRKDDPSSFTLNPCFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLNAPHDDAQIIIHERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAQEIAAGSDIIFTDDVSLQVFFEHLQRLAVQS 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5958565 5970759 - PI0009509.1 Cmetu06g0798 358460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0798 765 SUPERFAMILY Helical domain of Sec23/24 521 623 IPR036175 GO:0006886|GO:0006888|GO:0030127
Cmetu06g0798 765 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 624 764 IPR036180 -
Cmetu06g0798 765 SUPERFAMILY vWA-like 137 393 IPR036465 -
Cmetu06g0798 765 Gene3D Sec23/Sec24 helical domain 518 762 - -
Cmetu06g0798 765 SUPERFAMILY Zn-finger domain of Sec23/24 47 119 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cmetu06g0798 765 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cmetu06g0798 765 SUPERFAMILY beta-sandwich domain of Sec23/24 8 520 - -
Cmetu06g0798 765 Gene3D - 53 112 - -
Cmetu06g0798 765 FunFam Protein transport protein SEC23 53 112 - -
Cmetu06g0798 765 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 6 764 IPR037364 -
Cmetu06g0798 765 CDD Sec23_C 613 733 IPR037550 GO:0030127|GO:0090114
Cmetu06g0798 765 Gene3D Severin 623 727 IPR029006 -
Cmetu06g0798 765 FunFam Protein transport protein SEC23 518 639 - -
Cmetu06g0798 765 Pfam Sec23/Sec24 helical domain 521 617 IPR006900 GO:0006886|GO:0006888|GO:0030127
Cmetu06g0798 765 FunFam Protein transport protein SEC23 623 727 - -
Cmetu06g0798 765 Pfam Gelsolin repeat 633 721 IPR007123 -
Cmetu06g0798 765 FunFam Protein transport protein SEC23 136 402 - -
Cmetu06g0798 765 Pfam Sec23/Sec24 beta-sandwich domain 403 506 IPR012990 -
Cmetu06g0798 765 Gene3D von Willebrand factor, type A domain 136 401 IPR036465 -
Cmetu06g0798 765 Gene3D - 10 504 - -
Cmetu06g0798 765 Pfam Sec23/Sec24 trunk domain 136 392 IPR006896 GO:0006886|GO:0006888|GO:0030127
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0798 K14006 - - csv:101209792 1470.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0430 Cmetu-Chr5:18911501 Cmetu06g0798 Cmetu-Chr6:5958565 2.60E-183 dispersed
Cmetu06g0798 Cmetu-Chr6:5958565 Cmetu11g0301 Cmetu-Chr11:510039 8.00E-286 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1024 . . . . . . . . Cmo08g00949 . Cma06g01605 . Car06g01364 . Sed02g1076 Cpe08g00118 . Bhi01g01171 Tan10g1175 Cmetu06g0798 . Hepe05g1311 . Lcy11g1275 . . . . . . . Cone14ag0547 Cone15ag0568 Cone18ag0909 Cone11ag0596 . . . Cme06g00863 . Blo07g00065 . Bda13g00305 . . . . . . . Cma08g00981 . Car08g00861 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004546 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42