Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0815 ATGGGGAAGAACAAAACCACCGACCCCAAAAATCCCCCTGACGAAATCTCCACTGTTGCTTCTCCCTTCAGCGTTTTCGATACTCTCTTCGGCAGCGCCGGTGTTGAAAACCCCGCCGTTTCTATCTTCTCCAGTGACAACCCTTTTCGTAGGAAAGATTCAGATTCAATTCCTCCTCCACCTGCTGAAAACAGTAGGAAGAAGGGCAAGGAGAAAAGGGTTGGTATTGATTTGGATTCTACTGAAGAAGGTGTTAAAACTTCATCGGAGATTAAGAAATCTAAGAAGAAGGAGAAAGAGAAGTCTCGGGACCGCGAATTGGATAATGTAGATGATGATGGAGAAAGGGGTTTCGAATCGCAAGGTGTATTGAAGGATAATAAGAAGAAAGGTACTGTTTTGGGCTCTGAAACTTCAGAAAAGAGTCATGGATTTGACGGGAGTAAACTCGGTGAGAATGTGAAATTGATGAAGGAGAGGAAAAAGAGGAAGAGAGATGAACTTGAGAGAGAGTATGAAGCCAAAAGGTATGGTGTATCAGAGGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGTAATGTTGTTGGGAAGAAGAGGAAAGCATTGGATGATCCTTCAGAGATGTTGGTTACAAAGGAAGGATTTGATGATGAAAGTAAGCTTTTGAGAACTGTGTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAGAAAGCTTTAGCCAAGGAGTTTAGCCAATTTGGAGAGATAGATTCTGTTAGGATCCGGTCTGTACCAATTGACATTGCAAATCAAAAACCAAGGAAGGGGGCAATCATTTCTAAGAAACTCAATGAAGCTGCGGACAGTTCTCATGCATACGTTGTTTTTAAAACGGAGGAATCAGCACAGGCTTCTTTGTCCCATAACATGGCTGTGTTTGCAGGAAATCATATACGAGTCGATAGAGCATGCCCACCACATAAAAAGTTGAAAGTAGGAAATGGGCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAATTATTCTGCGGAATCGACAATATGGGATCCAGTGTTGAGGCTGTTCGGGTCATTAGAGATCCCAAGGTGAACGTAGGGAAGGGCTTTGCGTATGTCTTCTTTAAAACAAGGGAAGCAGCAAACTCCGTAGTAGTTAATAATCAAAAACTAGAGTTGCGTGGTCGAACGCTGAGGCTCTTTCATGCCAAATCAAATCCAACATCGACTCCGTTTAAGAAACGGAATAGGCCACCTACAGAAGCTGATCACACCCCAGCAAAGAAAAATGCTGTGGATTCAGGTTTAGGCACGCCAGACAGCAGCAAGAGGGTAACGCCAAAGGCGACCAATGCATCCTATCAGGGCCTGCGTGCGAGCAAAAGTGGTTCCCAGAAGAAGATCCATACTAAAGGCAGTAGTTTTACTAAAGGCAGTAGTACGAAATGGCCGAAATCACATTCAAACAGTAAAGAGAAGCCAATAGATCACAAGAAGAGAAAAGGACCAGAGAAGACAAGTGAAAGAAAGGGTAAGAGACCAGCAGTTGCCAACAGAAAGGCTGCGGTGAAGGCAACGAAAAATGGCATTGCAACACCGAAACAGGCCGGATTAAAGCGCAAGTCTGATAGCCGAAGTCCAGGGAGCTCTCACAGGAATAAGAGAGTCAAAAGGTTTAGATAG 1719 43.75 MGKNKTTDPKNPPDEISTVASPFSVFDTLFGSAGVENPAVSIFSSDNPFRRKDSDSIPPPPAENSRKKGKEKRVGIDLDSTEEGVKTSSEIKKSKKKEKEKSRDRELDNVDDDGERGFESQGVLKDNKKKGTVLGSETSEKSHGFDGSKLGENVKLMKERKKRKRDELEREYEAKRYGVSEVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANQKPRKGAIISKKLNEAADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFVGNLPFDVKDEELYQLFCGIDNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAANSVVVNNQKLELRGRTLRLFHAKSNPTSTPFKKRNRPPTEADHTPAKKNAVDSGLGTPDSSKRVTPKATNASYQGLRASKSGSQKKIHTKGSSFTKGSSTKWPKSHSNSKEKPIDHKKRKGPEKTSERKGKRPAVANRKAAVKATKNGIATPKQAGLKRKSDSRSPGSSHRNKRVKRFR 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29796355 29799340 + PI0015781.1 Cmetu06g0815 358477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0815 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 318 IPR000504 GO:0003723
Cmetu06g0815 572 MobiDBLite consensus disorder prediction 36 150 - -
Cmetu06g0815 572 SUPERFAMILY RNA-binding domain, RBD 329 429 IPR035979 GO:0003676
Cmetu06g0815 572 Gene3D - 331 436 IPR012677 -
Cmetu06g0815 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 411 IPR000504 GO:0003723
Cmetu06g0815 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 257 IPR000504 GO:0003723
Cmetu06g0815 572 MobiDBLite consensus disorder prediction 447 497 - -
Cmetu06g0815 572 MobiDBLite consensus disorder prediction 414 572 - -
Cmetu06g0815 572 SUPERFAMILY RNA-binding domain, RBD 223 329 IPR035979 GO:0003676
Cmetu06g0815 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 417 IPR000504 GO:0003723
Cmetu06g0815 572 MobiDBLite consensus disorder prediction 64 150 - -
Cmetu06g0815 572 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 329 525 - -
Cmetu06g0815 572 SMART rrm1_1 224 314 IPR000504 GO:0003723
Cmetu06g0815 572 SMART rrm1_1 336 413 IPR000504 GO:0003723
Cmetu06g0815 572 Coils Coil 151 174 - -
Cmetu06g0815 572 CDD RRM1_RBM34 223 314 - -
Cmetu06g0815 572 MobiDBLite consensus disorder prediction 498 527 - -
Cmetu06g0815 572 Gene3D - 220 323 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0815 K14837 - - csv:101206555 974.156
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .