Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmetu06g0838 | ATGAATGACGCAGATGTTTCCAAGCAGATCCAGCAGATGGTCAGGTTCATCCGCCAGGAAGCCGAGGAAAAGGCCAACGAGATCTCCGTCTCTGCTGAAGAAGAATTCAATATTGAAAAGTTGCAGCTGGTTGAGGCAGAGAAGAAGAAGATCAGGCAGGAGTACGAGAAGAAGGAGAAGCAAGTTGAAATTCGGAAGAAGATCGAGTACTCCATGCAGCTCAATGCTTCTCGGATCAAAGTTCTGCAAGCTCAGGATGATGTTGTAAACAATATGAAAGAGGCAGCATCAAAGGAGCTTCTCAATGTAAGCCAAAATGAACATGTCTACAAGAATCTTTTGAAGGATCTCATTGTTCAGAGCTTGCTTCGACTGAAAGAGCCAGCTGTTTTATTGCGATGCCGCAAAAGTGACGTCCATTTGGTGGAGTCTGTGTTGGGTTCAGCAGCTGTTGAATATGCAGAGAAAGCAAAAGTTCATGAGCCAGAGATCATTGTTGACCATGTCCATCTTCCACCTGGTCCAAGCCATCACCATCATCACGGTCCTTCTTGCTCCGGAGGTGTGGTCTTGGCATCTCGTGATGGGAAGATCGTCTGTGAGAACACCCTTGATGCTAGATTGGATGTTGTGTTCCGTAAAAAACTTCCAGAGATCCGAAAAAGCCTTTTCAGTCAAGTTGCTGCATGA | 690 | 45.8 | MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNNMKEAASKELLNVSQNEHVYKNLLKDLIVQSLLRLKEPAVLLRCRKSDVHLVESVLGSAAVEYAEKAKVHEPEIIVDHVHLPPGPSHHHHHGPSCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKSLFSQVAA | 229 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 21553743 | 21557729 | - | PI0027648.1 | Cmetu06g0838 | 358500 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmetu06g0838 | 229 | Gene3D | - | 92 | 228 | IPR038495 | - | |
| Cmetu06g0838 | 229 | Hamap | V-type proton ATPase subunit E [atpE]. | 8 | 225 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Cmetu06g0838 | 229 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 226 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Cmetu06g0838 | 229 | Coils | Coil | 38 | 61 | - | - | |
| Cmetu06g0838 | 229 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 224 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Cmetu06g0838 | 229 | Gene3D | - | 1 | 62 | - | - | |
| Cmetu06g0838 | 229 | SUPERFAMILY | V-type ATPase subunit E-like | 87 | 224 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmetu06g0838 | K02150 | - | - | csv:101217221 | 396.356 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cmetu03g1891 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1618.2 | |
| Cmetu11g1679 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.3 | 0.0e+00 | 1342.8 | |
| Cmetu03g1529 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 62.9 | 4.5e-295 | 1010.7 | |
| Cmetu01g1260 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 1.3e-294 | 1009.2 | |
| Cmetu01g1260 | . | 7 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1226.8 | |
| Cmetu03g1529 | . | 1 | 808 | Primary Pumps ATPases(2) | AT2G21410 | 73.1 | 0.0e+00 | 1194.9 | |
| Cmetu11g1679 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.3 | 3.7e-297 | 1017.7 | |
| Cmetu01g1260 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1233.0 | |
| Cmetu03g1529 | . | 1 | 808 | Primary Pumps ATPases(2) | AT4G39080 | 73.8 | 0.0e+00 | 1188.7 | |
| Cmetu11g1679 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.3 | 3.1e-296 | 1014.6 | |
| Cmetu03g2002 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cmetu03g1404 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cmetu07g1091 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cmetu03g1404 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 8.8e-67 | 250.4 | |
| Cmetu07g1091 | . | 1 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 81.0 | 1.5e-66 | 249.6 | |
| Cmetu03g2002 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.0e-66 | 249.2 | |
| Cmetu03g1404 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.4e-73 | 272.7 | |
| Cmetu07g1091 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.4e-73 | 272.7 | |
| Cmetu03g2002 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.3e-73 | 271.9 | |
| Cmetu07g1091 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.7e-52 | 202.2 | |
| Cmetu03g1404 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 3.7e-52 | 201.1 | |
| Cmetu03g2002 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.4e-52 | 200.3 | |
| Cmetu03g1752 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 81.9 | 1.5e-70 | 263.1 | |
| Cmetu04g1520 | . | 1 | 175 | Primary Pumps ATPases(2) | AT2G25610 | 83.4 | 2.5e-70 | 262.3 | |
| Cmetu03g2002 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 227.6 | |
| Cmetu03g1404 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 227.6 | |
| Cmetu07g1091 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 227.6 | |
| Cmetu03g1752 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 75.2 | 1.2e-74 | 276.6 | |
| Cmetu04g1520 | . | 6 | 175 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 8.6e-73 | 270.4 | |
| Cmetu12g0878 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.7 | 0.0e+00 | 1672.1 | |
| Cmetu12g0878 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 81.0 | 0.0e+00 | 1681.0 | |
| Cmetu03g1891 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1618.2 | |
| Cmetu12g0878 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.5 | 0.0e+00 | 1318.5 | |
| Cmetu02g2076 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.4e-57 | 219.2 | |
| Cmetu01g2368 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 2.8e-268 | 921.0 | |
| Cmetu09g1575 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.5 | 9.0e-182 | 633.3 | |
| Cmetu05g1761 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 1.4e-117 | 419.5 | |
| Cmetu04g0830 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 80.1 | 5.0e-208 | 720.7 | |
| Cmetu03g1404 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.4e-73 | 272.7 | |
| Cmetu07g1091 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.4e-73 | 272.7 | |
| Cmetu03g2002 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.3e-73 | 271.9 | |
| Cmetu01g2368 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.3 | 4.4e-269 | 923.7 | |
| Cmetu06g0838 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 77.0 | 7.1e-66 | 247.3 | |
| Cmetu01g2368 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 5.8e-266 | 913.3 | |
| Cmetu11g1679 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.3 | 0.0e+00 | 1342.8 | |
| Cmetu03g1529 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 62.9 | 4.5e-295 | 1010.7 | |
| Cmetu01g1260 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 1.3e-294 | 1009.2 | |
| Cmetu04g2429 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.7e-192 | 666.8 | |
| Cmetu06g0838 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.8 | 2.2e-90 | 328.9 | |
| Cmetu01g0195 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.1 | 0.0e+00 | 1171.0 | |
| Cmetu01g2368 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 2.8e-268 | 921.0 | |
| Cmetu01g2368 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.3 | 4.4e-269 | 923.7 | |
| Cmetu01g2368 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 5.8e-266 | 913.3 | |
| Cmetu09g1575 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.5 | 9.0e-182 | 633.3 | |
| Cmetu05g1761 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 1.4e-117 | 419.5 | |
| Cmetu06g0838 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.8 | 2.2e-90 | 328.9 | |
| Cmetu06g0838 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 69.5 | 5.4e-76 | 281.2 | |
| Cmetu06g0838 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 77.0 | 7.1e-66 | 247.3 | |
| Cmetu02g2076 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.4e-57 | 219.2 | |
| Cmetu04g0830 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 80.1 | 5.0e-208 | 720.7 | |
| Cmetu11g1679 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.3 | 0.0e+00 | 1342.8 | |
| Cmetu03g1529 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 62.9 | 4.5e-295 | 1010.7 | |
| Cmetu01g1260 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 1.3e-294 | 1009.2 | |
| Cmetu01g1260 | . | 7 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1226.8 | |
| Cmetu03g1529 | . | 1 | 808 | Primary Pumps ATPases(2) | AT2G21410 | 73.1 | 0.0e+00 | 1194.9 | |
| Cmetu11g1679 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.3 | 3.7e-297 | 1017.7 | |
| Cmetu01g1260 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1233.0 | |
| Cmetu03g1529 | . | 1 | 808 | Primary Pumps ATPases(2) | AT4G39080 | 73.8 | 0.0e+00 | 1188.7 | |
| Cmetu11g1679 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.3 | 3.1e-296 | 1014.6 | |
| Cmetu03g2002 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cmetu03g1404 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cmetu07g1091 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cmetu07g1091 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.7e-52 | 202.2 | |
| Cmetu03g1404 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 3.7e-52 | 201.1 | |
| Cmetu03g2002 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.4e-52 | 200.3 | |
| Cmetu03g2002 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 227.6 | |
| Cmetu03g1404 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 227.6 | |
| Cmetu07g1091 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 227.6 | |
| Cmetu03g1404 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 8.8e-67 | 250.4 | |
| Cmetu07g1091 | . | 1 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 81.0 | 1.5e-66 | 249.6 | |
| Cmetu03g2002 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.0e-66 | 249.2 | |
| Cmetu03g1404 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.4e-73 | 272.7 | |
| Cmetu07g1091 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.4e-73 | 272.7 | |
| Cmetu03g2002 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.3e-73 | 271.9 | |
| Cmetu03g1752 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 75.2 | 1.2e-74 | 276.6 | |
| Cmetu04g1520 | . | 6 | 175 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 8.6e-73 | 270.4 | |
| Cmetu03g1752 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 81.9 | 1.5e-70 | 263.1 | |
| Cmetu04g1520 | . | 1 | 175 | Primary Pumps ATPases(2) | AT2G25610 | 83.4 | 2.5e-70 | 262.3 | |
| Cmetu04g2429 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 5.8e-199 | 690.3 | |
| Cmetu04g2429 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.7e-192 | 666.8 | |
| Cmetu12g0878 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.7 | 0.0e+00 | 1672.1 | |
| Cmetu12g0878 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.5 | 0.0e+00 | 1318.5 | |
| Cmetu03g1891 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1618.2 | |
| Cmetu12g0878 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 81.0 | 0.0e+00 | 1681.0 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0004110 | 2 | 0 | 1 | 3 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 41 |