Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0936 ATGGGGAAGATTCGCGGCAGAGATCAGAGATCCATGGAAGAAGACGAGAGTCTGATTAGACCTACTTCCAGTAGTTTGAGTTCCACCGTTGAATCCTTCAGCGGTCCTCGCCCTCCCTCCTCCCTTCCCGCCGTTACTACCACTTCTCCCTCTCGTCGTTACCCTCGTACTCCCCCACTTCTACCTGAGGATTGCCATAGCGATTGCGATTCTTCTTCCTCCGTTATTGACGACGGCGACGATATCGCTTCCTCCCCGTCGTCCCTCGGAGAAAACCTCCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTCTTGATTTTAGCGGCGATGATCTTCGATGTACTGCGTTGTGCCTTTGACCACCGGCGGCGATGA 381 53.54 MGKIRGRDQRSMEEDESLIRPTSSSLSSTVESFSGPRPPSSLPAVTTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSPSSLGENLLCLSISTFHLPIFLILAAMIFDVLRCAFDHRRR 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26487941 26488496 + PI0023041.1 Cmetu06g0936 358598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0936 126 MobiDBLite consensus disorder prediction 1 17 - -
Cmetu06g0936 126 MobiDBLite consensus disorder prediction 18 54 - -
Cmetu06g0936 126 MobiDBLite consensus disorder prediction 1 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0936 K09286 - - csv:101219993 95.1301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0936 Cmetu-Chr6:26487941 Cmetu05g1128 Cmetu-Chr5:20786257 6.60E-12 dispersed
Cmetu06g0936 Cmetu-Chr6:26487941 Cmetu11g2430 Cmetu-Chr11:10002666 2.10E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g564 . . . . Bpe09g00157 . Bma10g00572 Bma13g01075 Cmo16g00944 . . . . . . . . . . . . . . . Cla10g00484 Cam10g0471 Cec10g0491 Cco10g0478 Clacu10g0490 Cmu10g1318 Cre10g0724 . Cone10ag1399 Cone8ag1554 Cone12ag1475 . Csa03g00483 . Cme06g02844 Blo07g00887 . Bda05g00702 Bda12g00930 . Bpe03g00777 . . . . . . Cma16g00908 . Car16g00883 . . Bhi11g00585 Tan01g1742 Cmetu06g0936 . Hepe06g0015 . . . . . . . . . Lsi05g00571 . Chy06g01839 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0049371 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1