Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0945 ATGGCCTCAAAACAATCTTCAAAACAACCCATTATTTCCCTATGGACAAAATTCTACACCATCTCTCTAATCCTCTTCCTCTGTTTTTCCTTTTACTTTCTCGGCCTCCGCCAACAACCCTCCTCTGCCGCCATCCTCCCATGCACCACCCTCCAAAACATCACCATCACTGCCGCAAAACCTTTTCCGGCATGTGGGTTGGAGTACAGCGAGTACACGCCATGTGAGGACACGAAAAGGTCTCTCAAGTTCAGCAGAGATAGGCTGATTTACAGAGAGAGGCATTGCCCGGAGAAGGAGGAGGGATTGAAGTGCCAAATTCCGGCACCGCCGGGGTACCAGAATCCGTTCGCGTGGCCGGTGAGTAGAGATTTGGCGTGGTATGTGAATGTGCCACATAAGGATCTGACGGTGGAGAAAGCTGTGCAGAATTGGATTAGATATGAAGGGAAGACGTTTAGATTTCCGGGCGGAGGGACGATGTTTCCCGACGGAGCTGATGCGTATATTGATAACATTGGGAAATTAATTAATCTTAAAGATGGTTCCATCAGAACCGCCATTGATACTGGCTGTGGGGTGGGAAGTTGGGGAGCTTATTTACTGTCAAGAGACATTATAACAATGTCATTTGCACCAAGGGACACTCATGAAGCCCAAGTTCAATTTGCTTTAGAAAGAGGAGTTCCTGCACTCATTGGCATTCTTGCTTCTAAGAGGCTCCCTTATCCTTCAAATGCCTTTGACATGGCTCATTGCTCTCGCTGTCTAATCCCTTGGTCTCAATATGATGGGATCTTCCTCATTGAAGTTGATCGAGTTCTACGCCCCGGCGGGTACTGGATTTTATCAGGCCCTCCAATTAACTGGAAGAAACACTGGAAAGGTTGGGAAAGAACAAAGGAAGATTTGAATTCTGAACAGCTTGCTATTGAAAAGGTTGCCAAAAGCCTCTGTTGGACTAAACTAGTTGAAGATGGTGATATTGCCATTTGGCAGAAGCCTATCAATCACTTGAATTGTGAAGTCAACCGCAAGATCACTAAGAATCCACCTTTCTGTAATGCTCAAGATCCTGACAGAGCTTGGTATACAGATATGCAAACTTGTTTGACACATTTGCCTGAAGTTTCAAACAGTAAAGAAATAGCAGGAGGGAAGTTGGCAAGATGGCCAGAAAGGCTAAATGCAATCCCTCAAAGGATTAGTAGAGGAACTGTGGAAGGGGTGACGGAAGAAACATTCATTCATGATTCTGAGCTATGGAAGAAGAGGTTGACCTATTACAGAACCATAAACAATCAGTTGAATAAGCCTGGTCGGTACCGCAATTTCTTAGACATGAATGCTTTCTTGGGTGGATTTGCTGCTGCTCTGGTTGATGATCCAGTTTGGGTGATGAATGTGGTCCCTGTGGATGTCAAAGTCAATACACTCGGAGTCATATATGACAGAGGTTTGATCGGCACGTATCAAGATTGGTGTGAGGCAATGTCTACTTATCCAAGAACTTATGACTTCATTCATGCTGATTCAGTTTTTAGCCTCTATGAGAATAGATGTGAAATGGAAGACATTCTACTTGAAATGGACAGAATTCTGAGGCCAGAAGGAAGCGTAATCTTTCGAGAGAACATTGACATTTTGGCGAAAATCAAGACGATAACTGATAATTTGAATTGGAGCAGTCAAATTGTGCATCATGAAGATGGACCTTATCATATGGAGAAACTTTTATTTGCAGTAAAAAACTATTGGACAGCTCCTCCTGAACTTTCTGATCAACAGCAAGAATCTAAAGCAACTTAA 1809 43.73 MASKQSSKQPIISLWTKFYTISLILFLCFSFYFLGLRQQPSSAAILPCTTLQNITITAAKPFPACGLEYSEYTPCEDTKRSLKFSRDRLIYRERHCPEKEEGLKCQIPAPPGYQNPFAWPVSRDLAWYVNVPHKDLTVEKAVQNWIRYEGKTFRFPGGGTMFPDGADAYIDNIGKLINLKDGSIRTAIDTGCGVGSWGAYLLSRDIITMSFAPRDTHEAQVQFALERGVPALIGILASKRLPYPSNAFDMAHCSRCLIPWSQYDGIFLIEVDRVLRPGGYWILSGPPINWKKHWKGWERTKEDLNSEQLAIEKVAKSLCWTKLVEDGDIAIWQKPINHLNCEVNRKITKNPPFCNAQDPDRAWYTDMQTCLTHLPEVSNSKEIAGGKLARWPERLNAIPQRISRGTVEGVTEETFIHDSELWKKRLTYYRTINNQLNKPGRYRNFLDMNAFLGGFAAALVDDPVWVMNVVPVDVKVNTLGVIYDRGLIGTYQDWCEAMSTYPRTYDFIHADSVFSLYENRCEMEDILLEMDRILRPEGSVIFRENIDILAKIKTITDNLNWSSQIVHHEDGPYHMEKLLFAVKNYWTAPPELSDQQQESKAT 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6967330 6972085 + PI0024002.1 Cmetu06g0945 358607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0945 602 FunFam Putative methyltransferase PMT15 140 334 - -
Cmetu06g0945 602 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 340 578 IPR029063 -
Cmetu06g0945 602 Gene3D Vaccinia Virus protein VP39 158 321 IPR029063 -
Cmetu06g0945 602 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 59 586 IPR004159 GO:0008168
Cmetu06g0945 602 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 93 291 IPR029063 -
Cmetu06g0945 602 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 71 583 IPR004159 GO:0008168
Cmetu06g0945 602 CDD AdoMet_MTases 186 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0945 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0090 Cmetu-Chr6:1436194 Cmetu06g0945 Cmetu-Chr6:6967330 8.50E-214 dispersed
Cmetu06g0945 Cmetu-Chr6:6967330 Cmetu09g1560 Cmetu-Chr9:18670905 2.30E-123 dispersed
Cmetu03g1412 Cmetu-Chr3:25206350 Cmetu06g0945 Cmetu-Chr6:6967330 8.40E-130 transposed
Cmetu04g1166 Cmetu-Chr4:3910135 Cmetu06g0945 Cmetu-Chr6:6967330 3.20E-111 transposed
Cmetu04g1225 Cmetu-Chr4:28766055 Cmetu06g0945 Cmetu-Chr6:6967330 2.20E-83 transposed
Cmetu04g1600 Cmetu-Chr4:16841620 Cmetu06g0945 Cmetu-Chr6:6967330 1.10E-144 transposed
Cmetu04g1727 Cmetu-Chr4:7794582 Cmetu06g0945 Cmetu-Chr6:6967330 6.60E-110 transposed
Cmetu05g0199 Cmetu-Chr5:18139030 Cmetu06g0945 Cmetu-Chr6:6967330 8.10E-124 transposed
Cmetu05g0398 Cmetu-Chr5:11649272 Cmetu06g0945 Cmetu-Chr6:6967330 6.60E-190 transposed
Cmetu06g2298 Cmetu-Chr6:29383626 Cmetu06g0945 Cmetu-Chr6:6967330 1.90E-144 transposed
Cmetu08g1457 Cmetu-Chr8:18013138 Cmetu06g0945 Cmetu-Chr6:6967330 1.20E-106 transposed
Cmetu09g1341 Cmetu-Chr9:847469 Cmetu06g0945 Cmetu-Chr6:6967330 8.80E-227 transposed
Cmetu10g1300 Cmetu-Chr10:15657292 Cmetu06g0945 Cmetu-Chr6:6967330 1.20E-126 transposed
Cmetu10g1592 Cmetu-Chr10:14240360 Cmetu06g0945 Cmetu-Chr6:6967330 3.70E-113 transposed
Cmetu06g2004 Cmetu-Chr6:1417535 Cmetu06g0945 Cmetu-Chr6:6967330 1.90E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g607 . . . . . . . Bma14g02088 Cmo16g00150 Cmo18g01254 . . . . Sed02g1606 . Cpe14g00121 Bhi01g01355 Tan01g0280 Cmetu06g0945 . Hepe07g0181 Mch10g0177 . . . . . . . . . . . . Lsi05g01255 . . Cme06g00973 . . . . . . . . . . . Cma16g00143 Cma18g01231 Car16g00124 Car18g01135 . . . . . . . . . Cla05g00857 Cam05g0943 Cec05g0948 Cco05g0948 Clacu05g0930 Cmu05g0888 Cre05g0973 . Csa03g01687 Chy06g00920 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002128 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 3 1 2 2 2 2 2 2 2 2 3 2 2 65