Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g0989 ATGGAAGAAGAGCTGAAGCTGTTCAGAACGTGGTCGAGTCCATTCCCTCTGAGAATAGTATGGGCATTGAAATTGAAAGGGTTAGAATACGACACAGTTTACGAAGATCTGGCCAACAAGAGTCCATTGCTTTTGGAGTACAATCCTATTCACAAGAAGGTTCCGGTGCTCGTCCATGGCGGAAAGCCGATCGCTGAATCGCTAGTTATTCTCGAATACATCGATGAAACGTGGAAACAAAATCCATTGCTGCCTCAGGATCCTTACCAGAGAGCTGTTGCTCGCTTTTGGGCTAAATTTGGGGATGACAAGGTTTTGGAATCTATAAAGAAAGTGCTTATGAACCAAGGGAAAGTGAGAGAGGAAGGTGTGGAAGAAGCCTTGGAGAATTTGAAGCATTTGGAAGAAGAGTTAAAAGGAAAGAGGTTCTTTGGAGGGGAGGCCATTGGGTTTGTGGATATTGCACTTGGGTGGCTTGCAAACTTAGTTAGTGTATTGGAGGAAGTTGTTGGACTTGAATTGATAACTGAAGAAAGGTTTCCTCTCTTATCCAAATGGACAAAGGAATTTGCTGCTGCTCCAATCATCAATGAAAACTGGCCACCAAGAGACAAGCTTATCACTAAGTACCAAGCATTGAATCAATCTTTTATGAGTAAACAAGAATAA 669 42.45 MEEELKLFRTWSSPFPLRIVWALKLKGLEYDTVYEDLANKSPLLLEYNPIHKKVPVLVHGGKPIAESLVILEYIDETWKQNPLLPQDPYQRAVARFWAKFGDDKVLESIKKVLMNQGKVREEGVEEALENLKHLEEELKGKRFFGGEAIGFVDIALGWLANLVSVLEEVVGLELITEERFPLLSKWTKEFAAAPIINENWPPRDKLITKYQALNQSFMSKQE 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1942583 1945409 - PI0012234.1 Cmetu06g0989 358651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g0989 222 CDD GST_C_Tau 88 207 IPR045074 GO:0004364|GO:0006749
Cmetu06g0989 222 FunFam Tau class glutathione S-transferase 84 220 - -
Cmetu06g0989 222 SUPERFAMILY Thioredoxin-like 5 104 IPR036249 -
Cmetu06g0989 222 Coils Coil 121 141 - -
Cmetu06g0989 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cmetu06g0989 222 SUPERFAMILY GST C-terminal domain-like 76 215 IPR036282 -
Cmetu06g0989 222 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cmetu06g0989 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 206 IPR045073 -
Cmetu06g0989 222 Pfam Glutathione S-transferase, C-terminal domain 118 194 IPR004046 -
Cmetu06g0989 222 CDD GST_N_Tau 5 78 - -
Cmetu06g0989 222 SFLD Main (cytGST) 2 221 - -
Cmetu06g0989 222 Gene3D - 84 221 - -
Cmetu06g0989 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 210 IPR010987 -
Cmetu06g0989 222 Gene3D Glutaredoxin 1 83 - -
Cmetu06g0989 222 FunFam Tau class glutathione S-transferase 1 86 - -
Cmetu06g0989 222 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g0989 K00799 - - csv:101219529 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0734 Cmetu-Chr2:22497116 Cmetu06g0989 Cmetu-Chr6:1942583 2.10E-50 dispersed
Cmetu06g0989 Cmetu-Chr6:1942583 Cmetu08g0227 Cmetu-Chr8:15529712 2.80E-58 dispersed
Cmetu06g0989 Cmetu-Chr6:1942583 Cmetu10g1222 Cmetu-Chr10:19368592 7.70E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g2501 . 1 210 Glutathione S-transferase Gene Family AT4G02520 59.6 5.6e-64 241.1
Cmetu01g1857 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.3e-63 240.0
Cmetu01g1052 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 7.6e-61 230.7
Cmetu01g2501 . 1 211 Glutathione S-transferase Gene Family AT2G02930 60.9 1.8e-65 246.1
Cmetu01g1052 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 1.6e-63 239.6
Cmetu01g1857 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 3.7e-63 238.4
Cmetu01g1857 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.2 5.0e-59 224.9
Cmetu01g2501 . 6 215 Glutathione S-transferase Gene Family AT1G02950 54.0 8.6e-59 224.2
Cmetu01g1052 . 5 206 Glutathione S-transferase Gene Family AT1G02950 55.2 8.0e-57 217.6
Cmetu01g2501 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.3 6.1e-63 237.7
Cmetu01g1857 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 1.4e-62 236.5
Cmetu01g1052 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 7.5e-61 230.7
Cmetu01g2501 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.7 1.6e-66 249.6
Cmetu01g1857 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 1.2e-63 240.0
Cmetu01g1052 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 4.7e-63 238.0
Cmetu01g1857 . 1 215 Glutathione S-transferase Gene Family AT2G47730 57.9 1.4e-67 253.4
Cmetu01g2501 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 7.5e-66 247.7
Cmetu01g1052 . 1 214 Glutathione S-transferase Gene Family AT2G47730 54.9 6.5e-62 234.6
Cmetu01g1572 . 5 215 Glutathione S-transferase Gene Family AT3G62760 59.7 9.0e-73 270.4
Cmetu08g0148 . 3 179 Glutathione S-transferase Gene Family AT2G29490 52.2 5.2e-44 174.9
Cmetu08g0148 . 6 163 Glutathione S-transferase Gene Family AT2G29470 50.9 1.3e-37 153.7
Cmetu06g0989 . 2 205 Glutathione S-transferase Gene Family AT2G29450 50.5 2.6e-51 199.1
Cmetu08g0148 . 3 159 Glutathione S-transferase Gene Family AT2G29440 53.5 2.3e-39 159.5
Cmetu08g0413 . 4 216 Glutathione S-transferase Gene Family AT3G09270 52.6 2.7e-64 242.3
Cmetu08g1346 . 1 221 Glutathione S-transferase Gene Family AT3G09270 53.8 7.8e-64 240.7
Cmetu08g0468 . 5 218 Glutathione S-transferase Gene Family AT3G09270 54.0 2.3e-60 229.2
Cmetu08g0998 . 3 215 Glutathione S-transferase Gene Family AT3G09270 51.4 2.6e-59 225.7
Cmetu08g0227 . 3 207 Glutathione S-transferase Gene Family AT3G09270 52.4 5.4e-57 218.0
Cmetu08g0211 . 1 218 Glutathione S-transferase Gene Family AT3G09270 50.2 6.0e-56 214.5
Cmetu07g0951 . 1 216 Glutathione S-transferase Gene Family AT1G78380 68.1 5.4e-86 314.3
Cmetu07g1785 . 1 215 Glutathione S-transferase Gene Family AT1G78380 69.8 5.4e-86 314.3
Cmetu07g1476 . 1 201 Glutathione S-transferase Gene Family AT1G78380 63.6 7.3e-75 277.3
Cmetu09g1597 . 4 221 Glutathione S-transferase Gene Family AT1G78380 54.6 4.8e-66 248.1
Cmetu07g0922 . 5 215 Glutathione S-transferase Gene Family AT1G78380 53.3 7.9e-61 230.7
Cmetu07g0212 . 1 166 Glutathione S-transferase Gene Family AT1G78380 64.5 2.5e-54 209.1
Cmetu07g1785 . 8 215 Glutathione S-transferase Gene Family AT1G78370 63.5 3.1e-78 288.5
Cmetu07g0951 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.7 1.5e-75 279.6
Cmetu07g1476 . 7 201 Glutathione S-transferase Gene Family AT1G78370 61.5 8.3e-71 263.8
Cmetu09g1597 . 7 220 Glutathione S-transferase Gene Family AT1G78370 52.8 5.4e-62 234.6
Cmetu07g0922 . 8 209 Glutathione S-transferase Gene Family AT1G78370 51.5 1.2e-56 216.9
Cmetu07g0212 . 7 166 Glutathione S-transferase Gene Family AT1G78370 57.5 2.4e-46 182.6
Cmetu07g1785 . 1 215 Glutathione S-transferase Gene Family AT1G78340 65.1 1.8e-81 299.3
Cmetu07g0951 . 1 216 Glutathione S-transferase Gene Family AT1G78340 62.0 7.0e-78 287.3
Cmetu07g1476 . 1 201 Glutathione S-transferase Gene Family AT1G78340 57.9 2.7e-69 258.8
Cmetu09g1597 . 4 219 Glutathione S-transferase Gene Family AT1G78340 52.3 2.1e-61 232.6
Cmetu07g0922 . 5 208 Glutathione S-transferase Gene Family AT1G78340 53.2 6.6e-60 227.6
Cmetu07g0212 . 1 177 Glutathione S-transferase Gene Family AT1G78340 55.9 3.3e-51 198.7
Cmetu06g0989 . 1 156 Glutathione S-transferase Gene Family AT1G78340 50.3 4.0e-41 165.2
Cmetu07g1785 . 3 206 Glutathione S-transferase Gene Family AT1G78320 54.4 5.0e-59 224.6
Cmetu07g1785 . 1 219 Glutathione S-transferase Gene Family AT1G17180 70.8 5.6e-91 330.9
Cmetu07g0951 . 1 218 Glutathione S-transferase Gene Family AT1G17180 62.4 1.6e-82 302.8
Cmetu07g1476 . 1 203 Glutathione S-transferase Gene Family AT1G17180 65.7 1.9e-78 289.3
Cmetu09g1597 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.3 5.7e-67 251.1
Cmetu07g0922 . 5 209 Glutathione S-transferase Gene Family AT1G17180 54.1 3.8e-63 238.4
Cmetu07g0212 . 1 166 Glutathione S-transferase Gene Family AT1G17180 61.4 2.1e-53 206.1
Cmetu07g1785 . 1 218 Glutathione S-transferase Gene Family AT1G17190 60.6 7.1e-78 287.3
Cmetu07g0951 . 3 217 Glutathione S-transferase Gene Family AT1G17190 55.8 1.3e-71 266.5
Cmetu07g1476 . 2 201 Glutathione S-transferase Gene Family AT1G17190 54.9 4.5e-64 241.5
Cmetu07g0922 . 5 213 Glutathione S-transferase Gene Family AT1G17190 50.7 2.9e-55 212.2
Cmetu07g0212 . 2 166 Glutathione S-transferase Gene Family AT1G17190 53.9 6.1e-45 177.9
Cmetu07g0951 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.1 4.8e-69 258.1
Cmetu07g1785 . 1 215 Glutathione S-transferase Gene Family AT3G43800 53.0 2.9e-66 248.8
Cmetu07g1476 . 3 189 Glutathione S-transferase Gene Family AT3G43800 53.4 3.1e-60 228.8
Cmetu07g1785 . 6 219 Glutathione S-transferase Gene Family AT1G53680 56.5 3.0e-68 255.4
Cmetu09g1597 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 2.0e-64 242.7
Cmetu07g0951 . 4 218 Glutathione S-transferase Gene Family AT1G53680 53.9 3.5e-64 241.9
Cmetu07g1476 . 1 201 Glutathione S-transferase Gene Family AT1G53680 53.9 3.7e-58 221.9
Cmetu11g0017 . 51 217 Glutathione S-transferase Gene Family AT2G02390 66.5 3.2e-58 221.9
Cmetu11g0442 . 50 218 Glutathione S-transferase Gene Family AT2G02390 59.8 4.3e-55 211.5
Cmetu11g0017 . 8 220 Glutathione S-transferase Gene Family AT2G02380 62.4 1.6e-72 269.6
Cmetu11g0442 . 6 218 Glutathione S-transferase Gene Family AT2G02380 57.7 1.4e-68 256.5
Cmetu06g2239 . 18 228 Glutathione S-transferase Gene Family AT2G02380 50.9 2.5e-54 209.1
Cmetu07g1782 . 1 237 Glutathione S-transferase Gene Family AT5G41210 67.5 7.4e-92 334.0
Cmetu07g1782 . 1 237 Glutathione S-transferase Gene Family AT5G41240 66.7 2.8e-89 326.6
Cmetu08g1266 . 9 233 Glutathione S-transferase Gene Family AT5G02780 66.7 4.6e-83 304.7
Cmetu08g1525 . 4 232 Glutathione S-transferase Gene Family AT5G02780 67.1 3.9e-82 301.6
Cmetu10g0072 . 75 294 Glutathione S-transferase Gene Family AT5G02780 63.5 1.5e-78 289.7
Cmetu08g1557 . 14 206 Glutathione S-transferase Gene Family AT5G02780 67.2 1.7e-72 269.6
Cmetu10g0072 . 17 292 Glutathione S-transferase Gene Family AT3G55040 59.2 1.6e-85 313.2
Cmetu08g1525 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 6.8e-76 281.2
Cmetu08g1266 . 4 231 Glutathione S-transferase Gene Family AT3G55040 58.3 2.4e-73 272.7
Cmetu08g1557 . 4 206 Glutathione S-transferase Gene Family AT3G55040 57.4 6.8e-68 254.6
Cmetu08g1525 . 4 232 Glutathione S-transferase Gene Family AT5G02790 68.3 7.3e-89 323.9
Cmetu08g1266 . 1 233 Glutathione S-transferase Gene Family AT5G02790 67.2 9.6e-89 323.6
Cmetu10g0072 . 67 294 Glutathione S-transferase Gene Family AT5G02790 61.1 7.3e-81 297.4
Cmetu08g1557 . 6 206 Glutathione S-transferase Gene Family AT5G02790 67.8 1.1e-76 283.5
Cmetu10g0567 . 1 212 Glutathione S-transferase Gene Family AT1G19570 68.1 3.8e-84 308.1
Cmetu10g0567 . 1 211 Glutathione S-transferase Gene Family AT1G75270 72.6 1.9e-88 322.4
Cmetu10g0567 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 8.9e-72 267.3
Cmetu06g2568 . 5 229 Glutathione S-transferase Gene Family AT5G16710 51.1 3.3e-66 248.8
Cmetu07g2081 . 1 249 Glutathione S-transferase Gene Family AT1G77290 66.5 5.0e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004777 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 2 2 1 1 1 2 4 40