Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1028 ATGGTTCTTGTTGGGTCTTTGCAACTGTCCTATCATCTAGGACCGTGGAGAAATTATTTGCATGAAAAAAATCTGAAGTTTACGTCCCAGAGCTATGGCATCCGGCTTCTGAATGTAGCCAGTTCATCATCTCTTTTGTTTCAGGACACTTGGAGCACTCATTTATTTAGCATGAAATACCCACCTAATTACACTGTGCCTTCTAGATACAATGTATTCAGGTGTCGGTCGTCATTGTTGACAAACCAACCACTGGATCCTCCTGGGATGAAGGCTGCTATAGTGACATTGACGAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTGATTAAGTTAGTTCCCGCAGTTTGTATTATAATATTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACGAGAAGCCTATTCCATAATGATAGCAACTGGAAGAAAAGTCGGACATATAATGTCATGACCTTGTATCTTCAACCATTATTGCTATGGACTGGAGCCACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACGTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCGTTGTCCACTGTGCTGGCCTCAGCATATTGTTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCAGTATGGGTTGCTGCTGTCTCATTGTTCATGGAGCTATTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGTTGACATTAGCTGGCCGTGAGATTTTCACCAACTTTCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATCGAGGGCTACGAAGTTTCTGGTACTGTTGAGCACGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATCAATTTACCATGAATGTCGTTAGAAATCTAAGTCAAAAAACTCACTGGCGGATTAAAACCCACATTGCCATCAGCCATTTGGACGTCAATAAAATCAATAACATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATTTTGATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATACCTATGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACACCACCGGGCTCGGCTTGCAACGCCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTGGAAAGTGTTCCATTTTCTGATTCAATATTTGGCCAGCGTGGTGCAACTTTGAATCGCCGCATGCTAATGATTGAGCCTCCTTACAAAGTTTATGGAGAAGATAGAAAACAAAGCCATAGCACTAACAGGACATCACGCACAACTGGAGAACAAAATGGTAAGCCCATTGCACGATCATCGGGTGACAGCAAAGCAGCTAAAGAGACAATGTCATCTGATAGAAAGACAGAAGTCAAGACTGGAGGAGACGCTGATACAAAAAAGCATTTCAAAGTTTCAATGTCAGCCTCTGAAGACAAATCAAGCAATGAATTGAAACATAAACCATCATCAAAGTCTGCTGCAAGTACCTCTGGTATGCCAACTTTTGATGCCAAACCAACTAAATCAGATGCTGATAATTCATTGGAAGATTCCAGTCCCAAGCAATCCGAAGACAGCATGGGAAGTAACACGCAGAACTTCAAGCCTTCCCTTCCTGCTGTTTCTTCTCCGGAAGATGTTAAGAAACCCGGAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGAATAGAAGGTGAGCAGACAACAGTTTCAAATACAACTGTTTCAAATCCATCAGCAAAGAAGCCTGGGGTAGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCTAAGAGAACACTCCCTATTGAGGACAATGTACCTACTACTGCATCGGGAGCAAAAGATTTGGCTGCATTCAATGGAGCAACAATGGCAGATAAGAATACGAAACGTCAGTCTCCTTCATCTCCTACCACATCTTCTAGTGAATAG 2193 42.04 MVLVGSLQLSYHLGPWRNYLHEKNLKFTSQSYGIRLLNVASSSSLLFQDTWSTHLFSMKYPPNYTVPSRYNVFRCRSSLLTNQPLDPPGMKAAIVTLTRFCNVLGGCPPPVIKLVPAVCIIIFAVWGLGPFLRYTRSLFHNDSNWKKSRTYNVMTLYLQPLLLWTGATLICRALDPVVLRTESSQVVKQRVLNFVRSLSTVLASAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHQFTMNVVRNLSQKTHWRIKTHIAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDLESVPFSDSIFGQRGATLNRRMLMIEPPYKVYGEDRKQSHSTNRTSRTTGEQNGKPIARSSGDSKAAKETMSSDRKTEVKTGGDADTKKHFKVSMSASEDKSSNELKHKPSSKSAASTSGMPTFDAKPTKSDADNSLEDSSPKQSEDSMGSNTQNFKPSLPAVSSPEDVKKPGGTTSAAASQPRIEGEQTTVSNTTVSNPSAKKPGVEENIILGVALDGSKRTLPIEDNVPTTASGAKDLAAFNGATMADKNTKRQSPSSPTTSSSE 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22851900 22861342 + PI0002717.1 Cmetu06g1028 358690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1028 730 MobiDBLite consensus disorder prediction 686 730 - -
Cmetu06g1028 730 MobiDBLite consensus disorder prediction 572 588 - -
Cmetu06g1028 730 MobiDBLite consensus disorder prediction 531 571 - -
Cmetu06g1028 730 MobiDBLite consensus disorder prediction 712 730 - -
Cmetu06g1028 730 MobiDBLite consensus disorder prediction 638 666 - -
Cmetu06g1028 730 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 720 IPR045042 -
Cmetu06g1028 730 SUPERFAMILY Sm-like ribonucleoproteins 281 351 IPR010920 -
Cmetu06g1028 730 Pfam Mechanosensitive ion channel 239 445 IPR006685 GO:0016020|GO:0055085
Cmetu06g1028 730 MobiDBLite consensus disorder prediction 493 671 - -
Cmetu06g1028 730 MobiDBLite consensus disorder prediction 506 522 - -
Cmetu06g1028 730 Gene3D - 195 295 - -
Cmetu06g1028 730 MobiDBLite consensus disorder prediction 605 624 - -
Cmetu06g1028 730 Gene3D - 297 352 IPR023408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1028 K22047 - - csv:101217250 1320.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1755 Cmetu-Chr3:2964478 Cmetu06g1028 Cmetu-Chr6:22851900 7.30E-182 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0130 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.2 7.5e-152 534.3
Cmetu06g1028 . 62 729 Mechanosensitive Ion Channel Family AT5G10490 58.2 2.0e-192 669.5
Cmetu03g1755 . 10 668 Mechanosensitive Ion Channel Family AT5G10490 54.4 2.6e-179 625.9
Cmetu03g1755 . 10 648 Mechanosensitive Ion Channel Family AT1G58200 53.4 3.6e-181 632.1
Cmetu06g1028 . 34 700 Mechanosensitive Ion Channel Family AT1G58200 52.8 1.5e-174 610.1
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G53470 56.1 1.8e-249 859.4
Cmetu01g0333 . 92 953 Mechanosensitive Ion Channel Family AT1G53470 51.0 1.0e-239 827.0
Cmetu11g1342 . 43 884 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.8e-237 817.8
Cmetu01g0333 . 60 953 Mechanosensitive Ion Channel Family AT1G78610 55.4 5.1e-273 937.6
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G78610 59.3 9.9e-269 923.3
Cmetu11g1342 . 217 891 Mechanosensitive Ion Channel Family AT2G17000 61.0 5.1e-225 778.1
Cmetu01g0333 . 267 941 Mechanosensitive Ion Channel Family AT2G17000 58.7 2.4e-222 769.2
Cmetu11g1342 . 1 668 Mechanosensitive Ion Channel Family AT2G17010 50.2 6.1e-165 578.2
Cmetu02g0585 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 9.0e-194 674.1
Cmetu07g1894 . 72 703 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.1e-178 622.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71