Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cmetu06g1064	ATGGCGAAGCACGAGGACCTTCCGATCCCTGTTTTCTCTTCACTCGACCCCGTTTATGGCGATGGATCTCAACTTGAAGAAGCTCGCCTTCGATTTGATCATCTCAAGGCTAAGTTTCTCCAAGTCTTCGGTCATCCTCCTGATGTATTTGCTCGTTCACCAGGGAGAGTGAACTTGATTGGAGAGCATATTGACTATGAAGGATATTCGGTGTTGCCGATGGCTATTCGACAGGATACGATCGTGGCAATTAGGAAGCATGACGCCGGAGAGGGGAATCATCTTCTCAAAATCGCTAATGTTAATGATAAATACTCGATATGTACTTATCCTGCTGATCCTGATCAGGAAGTTGACTTGAAGAATCACAAATGGGGACATTATTTCCTCTGCGGGTACAAAGGCTATTACGAGTTTGCTAAATCAAAAGGACAGGATGTCGGCGTGCCAGTTGGACTTGACGTTCTTGTTGATGGAACAGTGCCTACAGGATCTGGATTATCGAGCTCTGCTGCATTTGTTTGCTCTTCTACCATTGCTATCATGGCTGCTCTTGGTGCCAACTTTCCCAAGAAAGAGATTGCCGAACTTACCTGTGATTGTGAAAGACACATTGGTACACAATCTGGTGGAATGGATCAGGCGATCTCTGTCATGGCCAAGTCTGGGTTTGCAGAGCTGATTGACTTCAACCCTATTCGTGCTACTGATGTGCAACTTCCTGATGGTGGGACCTTTGTTATAGCCCATTCTCTAGCTGAATCACAGAAAGCAGTTACTGCTGCCACAAATTATAATAACAGAGTTGTTGAATGCCGACTTGCTTCTATTGTTCTAGGCATAAAGCTTGGCATGAAACCTGAAGAAGCGATAAAAAATGTGAAGACTTTATCTGATGTGGAAGAGCTGTGTCTTTCATTTGCTAAGGAGCGTAACTCTTCAGATCCTGTGCTTGCTGTCAAGTTTGTGCATGCTCTAAGTCTTTTTCGACGATCATGGGATAAGATTTCACAAAATCTCCCATTTTTGGGGTATAGGATACCCATGAAGAGATGGGGTTTTGTGAATGCCTGTGGCCCCGTAGGCATCAGGTGCCAATTGTCTTTCCAGCATGGGAATGAGGAACTGTTGAAGGAGGAACCCTATACAGCTGAAGAAATCGAACAAATCACTGTGGACAATCTGCCATCCGTTTTAGGCAACTCTCCTACTTCATTGGACGTTTTGAAAGCTGCCAAGCATTTCAAGTTGTATCAGCGAGCGTCCCACGTGTACTCTGAAGCCAGACGGGTGTATGCTTTCAAGGATGCAGTTTCATCAAGTTTAAGTGAGGAAGACAAGCTTAAGAAGCTCGGTGATCTTATGAATGATAGCCACTACAGCTGTAGCGTTCTTTATGAATGCAGCTGTCCCGAGTTGGAGGAACTTGTAAAGATATGCCGGGACAACGAGGCTCTTGGAGCCAGGCTAACTGGAGCAGGATGGGGAGGCTGTGCAGTCGCTCTTGTAAAAGAAGCCATTGTTCCCCAGTTCATTCTTAATCTGAAGGAAAACTTCTACGAATCGAGGATCGAACGAGGGGTCATCAACAAGGACGAACTAGGTCTTTACGTGTTTGCTTCCAAGCCATCAAGTGGAGCTGCCATCTTCCAGTTTTAG	1659	45.45	MAKHEDLPIPVFSSLDPVYGDGSQLEEARLRFDHLKAKFLQVFGHPPDVFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDAGEGNHLLKIANVNDKYSICTYPADPDQEVDLKNHKWGHYFLCGYKGYYEFAKSKGQDVGVPVGLDVLVDGTVPTGSGLSSSAAFVCSSTIAIMAALGANFPKKEIAELTCDCERHIGTQSGGMDQAISVMAKSGFAELIDFNPIRATDVQLPDGGTFVIAHSLAESQKAVTAATNYNNRVVECRLASIVLGIKLGMKPEEAIKNVKTLSDVEELCLSFAKERNSSDPVLAVKFVHALSLFRRSWDKISQNLPFLGYRIPMKRWGFVNACGPVGIRCQLSFQHGNEELLKEEPYTAEEIEQITVDNLPSVLGNSPTSLDVLKAAKHFKLYQRASHVYSEARRVYAFKDAVSSSLSEEDKLKKLGDLMNDSHYSCSVLYECSCPELEELVKICRDNEALGARLTGAGWGGCAVALVKEAIVPQFILNLKENFYESRIERGVINKDELGLYVFASKPSSGAAIFQF	552

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	5542496	5548893	+	PI0014518.3	Cmetu06g1064	358726

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cmetu06g1064	552	PIRSF	Galactokinase	23	552	IPR006206	GO:0005524\|GO:0005737\|GO:0016301\|GO:0016773
Cmetu06g1064	552	PANTHER	MEVALONATE KINASE/GALACTOKINASE	9	548	-	-
Cmetu06g1064	552	NCBIfam	galactokinase	34	522	IPR000705	GO:0004335\|GO:0005524\|GO:0006012\|GO:0046835
Cmetu06g1064	552	SUPERFAMILY	GHMP Kinase, C-terminal domain	245	527	IPR036554	-
Cmetu06g1064	552	Gene3D	-	464	539	-	-
Cmetu06g1064	552	ProSitePatterns	GHMP kinases putative ATP-binding domain.	161	172	IPR006203	GO:0005524
Cmetu06g1064	552	FunFam	galactokinase-like isoform X1	37	238	-	-
Cmetu06g1064	552	Pfam	GHMP kinases N terminal domain	154	219	IPR006204	GO:0005524
Cmetu06g1064	552	Pfam	Galactokinase galactose-binding signature	38	86	IPR019539	-
Cmetu06g1064	552	ProSitePatterns	Galactokinase signature.	55	66	IPR019741	-
Cmetu06g1064	552	Gene3D	-	20	251	IPR014721	-
Cmetu06g1064	552	Pfam	GHMP kinases C terminal	448	520	IPR013750	-
Cmetu06g1064	552	PRINTS	Galactokinase signature	55	73	IPR000705	GO:0004335\|GO:0005524\|GO:0006012\|GO:0046835
Cmetu06g1064	552	PRINTS	Galactokinase signature	152	170	IPR000705	GO:0004335\|GO:0005524\|GO:0006012\|GO:0046835
Cmetu06g1064	552	PRINTS	Mevalonate kinase family signature	487	504	-	-
Cmetu06g1064	552	PRINTS	Mevalonate kinase family signature	53	77	-	-
Cmetu06g1064	552	PRINTS	Mevalonate kinase family signature	159	181	-	-
Cmetu06g1064	552	Gene3D	-	364	463	-	-
Cmetu06g1064	552	Gene3D	-	260	337	-	-
Cmetu06g1064	552	SUPERFAMILY	Ribosomal protein S5 domain 2-like	27	242	IPR020568	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cmetu06g1064	K18674	-	-	csv:101222674	936.021

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi5g44	.	.	.	.	.	Bpe14g01089	.	.	.	.	Cma06g01572	Cma14g01579	Car06g01336	Car14g01390	Sed02g1128	Cpe08g00143	Cpe03g01318	Bhi01g01101	Tan10g1088	Cmetu06g1064	.	Hepe05g1365	.	Lcy11g1328	.	.	.	.	.	.	.	.	Cone15ag0720	.	.	Lsi05g01410	.	.	Cme06g00801	Blo02g00471	Blo07g00132	.	Bda13g00226	.	.	Bma02g00937	.	.	Cmo06g01566	Cmo14g01611	.	.	.	.	.	.	.	.	.	.	.	.	.	Cla05g00717	Cam05g0784	Cec05g0790	Cco05g0786	Clacu05g0774	Cmu05g0739	Cre05g0813	.	Csa03g01530	Chy06g00767	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0005121	1	1	2	2	1	1	2	1	1	1	1	1	2	1	1	2	1	2	2	1	1	2	1	1	1	1	1	4	1	1	41