Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1126 ATGATCTCTTCTTTAACTCAATCTGCAAAACCCATCAATGGGTCTGACGTGATTCTCCGGCGGAGGTCTCCGGTGCCAATCCGGCGGTTTTCGTGTTCACCTTCATTGCCGGCGCAAAAACCTCACAGCTCTGTTGTGTGTATGAAAAATGCTCTTCATATCTCATCGGTTTCCAATTTTGGGACGTTGGGAACTCGGAAGAGTGATTTGAGTACGTGCAAAGCGTACGAGGCTGACCGATCGCAGCCGATTGAGTCGAACATTGAACTGACGGTGGCCGAACAGCCGTCTGAGGCGGCGAAGAAGGTGAAGATCGGACTGTATTTTGCTCTTTGGTGGGGTTTGAACGTTGTGTTCAACATTTACAATAAGAAGGTTTTGAATGCGTATCCATATCCATGGCTAACCTCCACACTTTCTCTTGCTGTTGGTTCTCTCATCATGTTAGTCTCTTGGATGACGAGGATCGCTGAGGCTCCCAAGACTGATTTCGAGTTCTGGAAATCTTTGTTCCCTGTTGCTGTGGCCCACACAATTGGTCATGTGGCTGCAACAGTGAGCATGTCAAAGGTTGCTGTCTCGTTCACCCATATTATCAAAAGTGGTGAACCTGCATTTAGCGTATTGGTTTCAAGGTTCCTGTTGGGTGAGACTTTTCCTGTTCCGGTCTACCTCTCTCTTCTCCCGATCATCGGTGGTTGTGCTCTTGCTGCTGTGACCGAGCTCAACTTCAATATGATAGGTTTCATGGGAGCCATGATATCAAACTTGGCATTTGTCTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAAGTCTGTTAGTGGAATGAACTACTACGCATGTTTGTCTATATTATCCCTGTTGCTTCTTACCCCGTTCGCAATTGCTGTCGAAGGACCACAGATGTGGGCTGCAGGATGGAAAACAGCTCTCTCTGAGATTGGACCTAATTTTGTTTGGTGGGTAGCAGCACAGAGTGTCTTCTATCATCTCTACAACCAAGTATCTTACATGTCACTGGACGAAATTTCTCCGTTGACATTCAGCATTGGCAACACGATGAAACGTATATCGGTCATAGTTTCTGCAATAATCATCTTCCGCACGCCTATCCAACCCGTCAACGCTCTTGGAGCTGCGATCGCAGTTCTTGGAACCTTCTTATATTCACAGGCAAAACAATGA 1191 46.43 MISSLTQSAKPINGSDVILRRRSPVPIRRFSCSPSLPAQKPHSSVVCMKNALHISSVSNFGTLGTRKSDLSTCKAYEADRSQPIESNIELTVAEQPSEAAKKVKIGLYFALWWGLNVVFNIYNKKVLNAYPYPWLTSTLSLAVGSLIMLVSWMTRIAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLLLLTPFAIAVEGPQMWAAGWKTALSEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPIQPVNALGAAIAVLGTFLYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25957339 25961897 + PI0024131.1 Cmetu06g1126 358788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1126 396 PANTHER SOLUTE CARRIER FAMILY 35 104 395 - -
Cmetu06g1126 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Cmetu06g1126 396 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016020|GO:0022857|GO:0055085
Cmetu06g1126 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1126 K15283 - - csv:101216838 746.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1216 Cmetu-Chr4:2701672 Cmetu06g1126 Cmetu-Chr6:25957339 3.70E-120 dispersed
Cmetu04g1453 Cmetu-Chr4:24166522 Cmetu06g1126 Cmetu-Chr6:25957339 1.30E-186 dispersed
Cmetu06g1126 Cmetu-Chr6:25957339 Cmetu06g2347 Cmetu-Chr6:1930329 2.30E-87 dispersed
Cmetu06g1126 Cmetu-Chr6:25957339 Cmetu12g1268 Cmetu-Chr12:2488846 4.40E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g471 Blo03g00576 Blo03g01442 Bda07g00346 Bda09g00389 . Bpe08g01134 . . Cmo16g00906 . Cma01g01142 Cma09g00938 . Car09g00851 Sed07g2664 Cpe06g00755 Cpe02g00758 Bhi09g01923 Tan01g4525 Cmetu04g1453 . Hepe01g1296 Mch11g1168 . Cla10g00522 Cam10g0516 Cec10g0534 Cco10g0522 Clacu10g0539 Cmu10g1364 Cre10g0767 . . . . Lsi04g01225 Csa03g00529 . Cme06g02272 . . . . Bpe11g00531 . Bma07g01308 Bma14g00350 . Cmo01g01194 Cmo09g00935 . Cma16g00853 . Car16g00851 . . Bhi11g00645 Tan01g1685 Cmetu06g1126 . . Mch10g1237 . Cla05g01512 Cam05g1627 Cec05g1631 Cco05g1659 Clacu05g1612 Cmu05g1512 . Lsi05g00616 . Chy06g01802 Cme04g00848
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0917 . 1 409 Antiporters AT5G46110 79.3 2.0e-174 609.0
Cmetu10g0215 . 86 415 Antiporters AT5G46110 80.0 2.2e-149 525.8
Cmetu06g1126 . 1 395 Antiporters AT5G54800 74.2 6.9e-161 563.9
Cmetu04g1453 . 41 395 Antiporters AT5G54800 78.9 5.5e-158 554.3
Cmetu04g1216 . 1 317 Antiporters AT5G54800 68.3 1.7e-111 399.8
Cmetu06g2347 . 89 402 Antiporters AT5G54800 53.5 1.1e-86 317.4
Cmetu09g0702 . 29 398 Antiporters AT3G01550 61.5 1.4e-121 433.3
Cmetu12g1268 . 53 417 Antiporters AT3G01550 59.0 4.4e-112 401.7
Cmetu12g1268 . 1 419 Antiporters AT5G33320 71.7 9.2e-156 547.0
Cmetu09g0702 . 9 401 Antiporters AT5G33320 55.3 1.4e-111 400.2
Cmetu04g1453 . 22 396 Antiporters AT1G61800 76.1 1.9e-161 565.8
Cmetu06g1126 . 39 396 Antiporters AT1G61800 79.1 1.2e-158 556.6
Cmetu04g1216 . 1 317 Antiporters AT1G61800 71.5 1.6e-123 439.9
Cmetu06g2347 . 106 408 Antiporters AT1G61800 53.1 7.0e-87 318.2
Cmetu06g2347 . 13 419 Antiporters AT5G17630 70.2 9.1e-151 530.4
Cmetu04g1453 . 81 394 Antiporters AT5G17630 53.6 9.0e-90 327.8
Cmetu04g1216 . 92 312 Antiporters AT5G17630 51.8 9.7e-60 228.0
Cmetu06g1807 . 30 399 Antiporters AT3G13320 78.9 1.5e-159 559.7
Cmetu11g0389 . 72 449 Antiporters AT3G13320 76.6 5.3e-157 551.2
Cmetu04g2431 . 57 426 Antiporters AT3G13320 76.0 1.7e-155 546.2
Cmetu08g1189 . 5 422 Antiporters AT2G38170 68.6 3.0e-150 528.9
Cmetu08g0861 . 8 405 Antiporters AT2G38170 62.3 5.5e-136 481.5
Cmetu12g0922 . 27 315 Antiporters AT2G38170 56.4 2.2e-84 310.1
Cmetu08g1189 . 1 390 Antiporters AT3G51860 68.0 1.6e-135 479.9
Cmetu08g0861 . 4 394 Antiporters AT3G51860 64.4 4.6e-135 478.4
Cmetu12g0922 . 38 315 Antiporters AT3G51860 62.5 1.6e-90 330.5
Cmetu11g0389 . 64 416 Antiporters AT3G51860 50.8 2.2e-84 310.1
Cmetu06g1807 . 30 370 Antiporters AT3G51860 50.4 1.0e-81 301.2
Cmetu08g0861 . 29 405 Antiporters AT5G01490 60.9 4.6e-124 441.8
Cmetu08g1189 . 34 427 Antiporters AT5G01490 57.9 2.4e-120 429.5
Cmetu12g0922 . 27 315 Antiporters AT5G01490 53.0 1.0e-78 291.2
Cmetu06g1807 . 29 399 Antiporters AT1G55720 75.0 3.5e-148 521.9
Cmetu11g0389 . 72 445 Antiporters AT1G55720 73.6 1.9e-146 516.2
Cmetu04g2431 . 57 423 Antiporters AT1G55720 71.2 2.0e-140 496.1
Cmetu06g1807 . 29 399 Antiporters AT1G55730 79.5 3.5e-161 565.1
Cmetu11g0389 . 54 445 Antiporters AT1G55730 74.9 2.5e-159 558.9
Cmetu04g2431 . 57 427 Antiporters AT1G55730 76.1 9.0e-157 550.4
Cmetu11g0808 . 22 527 Antiporters AT5G27150 75.2 5.9e-219 757.3
Cmetu02g0177 . 4 499 Antiporters AT5G27150 72.4 1.2e-211 733.0
Cmetu01g2066 . 25 538 Antiporters AT5G27150 69.3 1.7e-202 702.6
Cmetu01g0802 . 12 501 Antiporters AT5G27150 60.4 5.8e-166 581.3
Cmetu11g0808 . 22 536 Antiporters AT3G06370 71.9 3.0e-210 728.4
Cmetu02g0177 . 5 498 Antiporters AT3G06370 67.3 5.5e-188 654.4
Cmetu01g2066 . 25 540 Antiporters AT3G06370 66.1 7.2e-188 654.1
Cmetu01g0802 . 5 501 Antiporters AT3G06370 59.5 4.1e-159 558.5
Cmetu01g0802 . 1 507 Antiporters AT5G55470 69.7 2.1e-205 712.2
Cmetu11g0808 . 18 514 Antiporters AT5G55470 58.6 2.0e-166 582.8
Cmetu01g2066 . 16 524 Antiporters AT5G55470 56.0 4.5e-155 545.0
Cmetu02g0177 . 18 485 Antiporters AT5G55470 56.7 6.1e-152 534.6
Cmetu11g0808 . 22 527 Antiporters AT3G05030 75.8 1.1e-223 773.1
Cmetu02g0177 . 10 502 Antiporters AT3G05030 74.1 6.2e-216 747.3
Cmetu01g2066 . 25 541 Antiporters AT3G05030 68.9 4.9e-205 711.1
Cmetu01g0802 . 12 501 Antiporters AT3G05030 59.8 1.7e-165 579.7
Cmetu01g1942 . 41 181 Antiporters AT3G05030 59.6 1.2e-36 151.8
Cmetu04g2720 . 102 667 Antiporters AT1G15460 70.4 1.9e-231 798.9
Cmetu03g1809 . 99 659 Antiporters AT1G15460 64.7 1.7e-216 749.2
Cmetu12g2100 . 11 518 Antiporters AT1G15460 57.6 6.5e-163 571.2
Cmetu04g3037 . 102 495 Antiporters AT1G15460 60.9 5.9e-132 468.4
Cmetu04g3037 . 3 495 Antiporters AT3G06450 75.9 2.7e-222 768.8
Cmetu03g1809 . 3 638 Antiporters AT3G06450 56.4 2.4e-215 745.7
Cmetu12g2100 . 11 557 Antiporters AT3G06450 67.6 5.4e-215 744.6
Cmetu04g2720 . 6 647 Antiporters AT3G06450 55.7 9.2e-215 743.8
Cmetu04g3037 . 1 495 Antiporters AT2G47160 82.7 1.4e-250 862.8
Cmetu12g2100 . 11 544 Antiporters AT2G47160 75.8 7.2e-236 813.9
Cmetu04g2720 . 1 647 Antiporters AT2G47160 56.7 8.3e-216 747.3
Cmetu03g1809 . 4 638 Antiporters AT2G47160 56.9 2.4e-215 745.7
Cmetu04g2720 . 1 667 Antiporters AT1G74810 69.6 7.9e-277 949.9
Cmetu03g1809 . 4 660 Antiporters AT1G74810 65.3 1.5e-256 882.5
Cmetu04g3037 . 7 495 Antiporters AT1G74810 60.3 2.7e-168 589.3
Cmetu12g2100 . 11 518 Antiporters AT1G74810 56.0 2.3e-159 559.7
Cmetu04g3037 . 1 495 Antiporters AT3G62270 86.7 1.1e-254 876.3
Cmetu12g2100 . 11 580 Antiporters AT3G62270 73.3 1.1e-236 816.6
Cmetu03g1809 . 4 638 Antiporters AT3G62270 59.3 7.5e-222 767.3
Cmetu04g2720 . 1 647 Antiporters AT3G62270 57.7 2.2e-218 755.7
Cmetu03g1809 . 4 657 Antiporters AT4G32510 67.1 1.6e-261 899.0
Cmetu04g2720 . 1 664 Antiporters AT4G32510 64.4 2.4e-254 875.2
Cmetu04g3037 . 1 495 Antiporters AT4G32510 57.2 2.9e-162 569.3
Cmetu12g2100 . 12 524 Antiporters AT4G32510 51.6 4.0e-148 522.3
Cmetu03g1809 . 4 655 Antiporters AT5G25430 69.5 8.3e-263 903.3
Cmetu04g2720 . 7 664 Antiporters AT5G25430 66.2 3.4e-248 854.7
Cmetu04g3037 . 7 495 Antiporters AT5G25430 56.6 3.9e-159 558.9
Cmetu12g2100 . 12 530 Antiporters AT5G25430 52.9 9.8e-147 517.7
Cmetu09g0963 . 12 1140 Antiporters AT2G01980 65.5 0.0e+00 1385.5
Cmetu09g0963 . 20 738 Antiporters AT1G14660 66.5 5.1e-274 940.6
Cmetu03g1078 . 55 597 Antiporters AT5G11800 80.7 2.2e-230 795.4
Cmetu02g1469 . 19 587 Antiporters AT5G11800 75.4 1.8e-224 775.8
Cmetu06g0204 . 57 571 Antiporters AT5G11800 66.9 1.7e-179 626.3
Cmetu09g0526 . 33 247 Antiporters AT5G11800 72.1 5.6e-77 285.8
Cmetu10g0547 . 18 199 Antiporters AT5G11800 70.9 9.6e-61 231.9
Cmetu09g0029 . 45 234 Antiporters AT5G11800 52.3 3.4e-50 196.8
Cmetu04g2843 . 11 145 Antiporters AT5G11800 73.3 1.2e-47 188.3
Cmetu08g0079 . 70 206 Antiporters AT5G11800 57.4 1.9e-40 164.5
Cmetu05g0698 . 3 116 Antiporters AT5G11800 71.1 3.9e-38 156.8
Cmetu06g0204 . 31 569 Antiporters AT5G51710 80.0 2.5e-236 815.1
Cmetu02g1469 . 51 560 Antiporters AT5G51710 68.8 5.5e-183 637.9
Cmetu03g1078 . 53 571 Antiporters AT5G51710 67.5 1.7e-179 626.3
Cmetu09g0526 . 33 247 Antiporters AT5G51710 81.4 2.5e-90 330.1
Cmetu10g0547 . 18 199 Antiporters AT5G51710 78.6 3.3e-71 266.5
Cmetu09g0029 . 45 234 Antiporters AT5G51710 55.4 3.1e-53 206.8
Cmetu04g2843 . 11 146 Antiporters AT5G51710 75.7 5.5e-50 196.1
Cmetu08g0079 . 62 205 Antiporters AT5G51710 52.9 3.5e-44 176.8
Cmetu05g0698 . 3 117 Antiporters AT5G51710 74.8 4.7e-41 166.4
Cmetu02g1469 . 39 584 Antiporters AT2G19600 81.1 9.7e-231 796.6
Cmetu03g1078 . 46 597 Antiporters AT2G19600 78.4 1.4e-224 776.2
Cmetu06g0204 . 49 556 Antiporters AT2G19600 67.1 1.3e-171 600.1
Cmetu09g0526 . 33 247 Antiporters AT2G19600 71.2 1.0e-75 281.6
Cmetu10g0547 . 18 199 Antiporters AT2G19600 67.6 5.8e-58 222.6
Cmetu09g0029 . 45 234 Antiporters AT2G19600 51.8 6.0e-47 186.0
Cmetu04g2843 . 11 145 Antiporters AT2G19600 69.6 1.6e-44 177.9
Cmetu08g0079 . 70 199 Antiporters AT2G19600 58.6 3.4e-42 170.2
Cmetu06g2679 . 143 561 Antiporters AT1G49810 76.7 4.2e-180 627.9
Cmetu06g2679 . 1 576 Antiporters AT3G19490 77.8 1.3e-248 855.9
Cmetu05g1369 . 101 547 Antiporters AT5G12860 91.3 3.9e-234 807.7
Cmetu07g1969 . 1 493 Antiporters AT5G64280 67.4 6.1e-195 677.6
Cmetu07g1969 . 22 493 Antiporters AT5G64290 80.5 4.6e-214 741.1
Cmetu01g0052 . 3 377 Antiporters AT4G28390 80.7 1.5e-171 599.4
Cmetu03g1926 . 3 343 Antiporters AT4G28390 70.8 3.9e-132 468.4
Cmetu08g0466 . 3 312 Antiporters AT4G28390 57.0 1.0e-100 364.0
Cmetu12g0390 . 1 269 Antiporters AT4G28390 61.7 5.1e-92 335.1
Cmetu03g1926 . 1 343 Antiporters AT3G08580 81.2 1.1e-155 546.6
Cmetu01g0052 . 62 376 Antiporters AT3G08580 83.9 1.7e-148 522.7
Cmetu08g0466 . 1 313 Antiporters AT3G08580 59.2 1.3e-103 373.6
Cmetu12g0390 . 1 269 Antiporters AT3G08580 55.6 7.0e-81 298.1
Cmetu01g0052 . 61 376 Antiporters AT5G13490 89.0 6.9e-161 563.9
Cmetu03g1926 . 1 343 Antiporters AT5G13490 80.3 5.6e-155 544.3
Cmetu08g0466 . 1 313 Antiporters AT5G13490 60.6 4.7e-109 391.7
Cmetu12g0390 . 1 269 Antiporters AT5G13490 58.5 3.5e-88 322.4
Cmetu12g0390 . 1 263 Antiporters AT5G17400 76.4 1.3e-114 409.8
Cmetu01g0052 . 77 363 Antiporters AT5G17400 64.5 1.3e-109 393.3
Cmetu03g1926 . 90 343 Antiporters AT5G17400 63.4 8.9e-95 344.0
Cmetu02g1135 . 4 542 Antiporters AT1G08960 67.0 5.5e-188 654.4
Cmetu07g1800 . 13 537 Antiporters AT2G47600 72.7 1.4e-215 746.1
Cmetu04g3033 . 1 300 Antiporters AT1G79900 68.8 6.1e-117 417.5
Cmetu01g1573 . 1 287 Antiporters AT1G79900 66.3 5.2e-108 387.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000860 1 3 2 2 2 3 4 3 3 3 3 3 5 3 3 4 3 4 4 3 3 3 2 3 3 3 3 3 4 1 89