Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1146 ATGAAGGGTTACTTGTGTTTTTCTCCTTACAAGCAAGTGTGGTACAATCACCATCTCTCGAACGGAGGAACCGCCACCGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCACCGCCACTGCCAACAATGAGCAAAACCAACAATGCGTGGTGAGAGAACAAGACCAATACATGCCGATTGCTAATGTGATACGAATCATGAGGCGGATTTTACCCTCCCATGCAAAGATATCCGACGACGCCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTGGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACGACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCCGAGAGTGACCGAATTCGCACTGAACCAATCTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCATACGGGCAGGCGTTTCAGATAGGGCACGTCCCAGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGCAGCGGTGGGCCGAGCGCAGGGAACGGGAGCCAGCTTTGA 621 52.5 MKGYLCFSPYKQVWYNHHLSNGGTATGNSSATSPLSVTATANNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGSGGPSAGNGSQL 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27007172 27009320 - PI0026844.1 Cmetu06g1146 358808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1146 206 Gene3D Histone, subunit A 43 158 IPR009072 GO:0046982
Cmetu06g1146 206 FunFam Nuclear transcription factor Y subunit B-6 46 158 - -
Cmetu06g1146 206 ProSitePatterns NF-YB/HAP3 subunit signature. 88 104 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmetu06g1146 206 SUPERFAMILY Histone-fold 54 147 IPR009072 GO:0046982
Cmetu06g1146 206 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Cmetu06g1146 206 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Cmetu06g1146 206 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Cmetu06g1146 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 121 IPR003958 -
Cmetu06g1146 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 37 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1146 K08065 - - csv:116402762 359.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1146 Cmetu-Chr6:27007172 Cmetu07g1457 Cmetu-Chr7:4048243 3.80E-33 dispersed
Cmetu06g1146 Cmetu-Chr6:27007172 Cmetu08g0078 Cmetu-Chr8:21871879 2.60E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1146 . 42 147 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.1 1.8e-47 186.4
Cmetu06g2349 . 6 152 CCAAT-HAP3 Transcription Factor Family AT5G47670 50.3 1.7e-37 153.3
Cmetu06g1146 . 44 169 CCAAT-HAP3 Transcription Factor Family AT1G21970 72.9 7.5e-49 191.0
Cmetu07g1457 . 9 136 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.0 2.3e-37 152.9
Cmetu06g2349 . 1 152 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.0 1.3e-49 193.0
Cmetu07g1457 . 27 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.2e-47 184.1
Cmetu11g2212 . 1 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.4 4.0e-46 181.4
Cmetu08g0078 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 4.5e-45 177.9
Cmetu10g1537 . 11 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.3 3.2e-43 171.8
Cmetu01g2588 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.0e-37 152.5
Cmetu10g1537 . 1 118 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.7 3.7e-49 191.4
Cmetu08g0078 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.1e-48 188.3
Cmetu06g2349 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 9.8e-42 166.8
Cmetu07g1457 . 14 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.8e-41 165.2
Cmetu01g2588 . 34 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.3e-38 156.4
Cmetu01g2588 . 44 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cmetu06g2349 . 19 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.2 1.2e-39 159.8
Cmetu07g1457 . 30 138 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.2e-38 154.5
Cmetu08g0078 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.7 1.9e-62 235.7
Cmetu10g1537 . 7 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.9 5.6e-54 207.6
Cmetu07g1457 . 29 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.2e-41 164.9
Cmetu06g2349 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 7.2e-41 164.1
Cmetu01g2588 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.2e-37 150.6
Cmetu07g1457 . 17 131 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.3e-44 176.0
Cmetu08g0078 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 6.6e-44 174.5
Cmetu06g2349 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.3e-41 166.0
Cmetu01g2588 . 22 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.0 2.6e-40 162.5
Cmetu10g1537 . 28 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 4.9e-39 158.3
Cmetu06g2349 . 1 126 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.7 4.2e-50 194.9
Cmetu07g1457 . 25 130 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 9.0e-45 177.2
Cmetu08g0078 . 11 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.8e-44 174.5
Cmetu10g1537 . 14 138 CCAAT-HAP3 Transcription Factor Family AT5G47640 65.6 7.6e-44 174.1
Cmetu11g2212 . 1 112 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.0 2.1e-41 166.0
Cmetu01g2588 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.3e-38 156.8
Cmetu08g0078 . 12 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 8.3e-61 230.3
Cmetu10g1537 . 12 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.6 9.8e-54 206.8
Cmetu06g2349 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.5e-41 166.4
Cmetu07g1457 . 18 122 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.3e-41 164.1
Cmetu01g2588 . 19 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.2 1.3e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006157 1 1 0 1 1 1 0 1 1 1 1 1 2 1 1 3 1 2 2 1 5 1 2 1 1 1 1 1 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8059 PF00808 CBFD_NFYB_HMF 2.30E-25 CL0012 Cmetu TF