Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1191 ATGGGCAAGAAGGGAGGATCCTCGTGGTTGACGGCCGTCAAAAGGGCTTTTAGATCTCCTTCAAAAGATGAAGATCACAAGAAAACAGAGAAACGAAGATGGGGTTTTAGGCGATCTACGAATCTGCACGACCCAGCCACCCACCAAACGCCCTCCAACCCATCCTCCGACGCGGCGCTTGCTGCGGCGGTGGCCACTGCCGAAGCTGCAATGGCCACCGCCCAAGCGGCTGTACAGGTTGCTCGCCTCACCACCAGCACCAGGCCTTCCAATCACGCCAGAGACCACTACGCTGCAGTTCTCATTCAGACTGCTTTTAGAGGATACCTGGCAAGGAGGGCTTTGCGTGCGCTCAAGGGGCTTGTGAAGTTGCAGGCTCTGGTGAGGGGTCACAACGTCAGGAAACAGGCTAAGATGACCCTCCGATGCATGCAAGCTCTGGTTCGAGTGCAGGCTCGTGTGCTCGATCAGCGGATGCGACTCTCTCATGAGGGGTCTAGTAATTCCACACTCAGCGACCCCAGTACCGCCCTTGGATCCCGTTACCTTCAATACTTGTCTGACAGGAAGGAGTTTGCAATGAAGCGTGATAGAAATCTCTCCCAACAGATATGGCGGAGAGGTCGTAGTCCGTCCATGGGCAGCGGGGATGATCTGGAAGAAAGACCCAAGTGGTTGGATCAATGGAATTCAAGGAAGGCATGGGAAAGCAGAGGAAGAGCTTCAACAGATCAAAGAGATCCAATCAAAACAGTGGAAATCGACACCTTCCAGCCTTACACTCGTACATCCTCCAACTTCCGAAGAATGGCCCAAAATCTACAAAGAACAAACCCGCATTCGGGCGGTTCGCCACTTCACCGGATGCAACAAAACGTATCCTCTTTCCACCACTCACCGGCCACACCCTCCCCCTCTAAAACCAGGCCTATGCTGCAAGTCCGGTCTGCAAGCCCGCGTTTCGTTAGAGAAGACAAAAGCGACAATACATCCCAAACACCGAGCTTAAGGTCAAACTATTACTACAGTGGGAATTTGGTCCAACAAGGGAGGAGTGGGGCGAGCAGCAGTTATGGTGGTGAAGGCAATTGCTTGCCCAATTACATGGCGGCCACGGAGTCTGCAAAGGCACGATTGCGGTCGCAGAGCGCCCCAAGGCAAAGGGCGTCAACGCCGGAGAGGGAGAGGGAGAAGGGAGGAGTTGGGTGTGCGAAGAAACGGCTGTCATTCCCAGTTGCCGATCCAATTGGGCATGGAGTTTTGAGGAGTCCAAGTTTCAAGAGCGTGAGTGGGACGTACTTGGGGATGGAGCAGCAATCCAACTATTCTTCCTGCTGTACTGAGAGCCTAGGCGGAGAGATTTCCCCATCATCAACCTCGGATCTAAGAAGGTGGCTAAGGTGA 1404 53.85 MGKKGGSSWLTAVKRAFRSPSKDEDHKKTEKRRWGFRRSTNLHDPATHQTPSNPSSDAALAAAVATAEAAMATAQAAVQVARLTTSTRPSNHARDHYAAVLIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGSSNSTLSDPSTALGSRYLQYLSDRKEFAMKRDRNLSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRKAWESRGRASTDQRDPIKTVEIDTFQPYTRTSSNFRRMAQNLQRTNPHSGGSPLHRMQQNVSSFHHSPATPSPSKTRPMLQVRSASPRFVREDKSDNTSQTPSLRSNYYYSGNLVQQGRSGASSSYGGEGNCLPNYMAATESAKARLRSQSAPRQRASTPEREREKGGVGCAKKRLSFPVADPIGHGVLRSPSFKSVSGTYLGMEQQSNYSSCCTESLGGEISPSSTSDLRRWLR 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 193013 195505 - PI0028805.2 Cmetu06g1191 358853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1191 467 Gene3D - 93 148 - -
Cmetu06g1191 467 MobiDBLite consensus disorder prediction 203 223 - -
Cmetu06g1191 467 FunFam IQ-domain 11 94 145 - -
Cmetu06g1191 467 MobiDBLite consensus disorder prediction 42 56 - -
Cmetu06g1191 467 PANTHER IQ-DOMAIN 5-RELATED 1 413 - -
Cmetu06g1191 467 SMART iq_5 94 116 IPR000048 GO:0005515
Cmetu06g1191 467 SMART iq_5 117 138 IPR000048 GO:0005515
Cmetu06g1191 467 MobiDBLite consensus disorder prediction 1 56 - -
Cmetu06g1191 467 Pfam IQ calmodulin-binding motif 122 138 IPR000048 GO:0005515
Cmetu06g1191 467 Pfam IQ calmodulin-binding motif 98 116 IPR000048 GO:0005515
Cmetu06g1191 467 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Cmetu06g1191 467 MobiDBLite consensus disorder prediction 443 467 - -
Cmetu06g1191 467 MobiDBLite consensus disorder prediction 17 39 - -
Cmetu06g1191 467 MobiDBLite consensus disorder prediction 293 340 - -
Cmetu06g1191 467 MobiDBLite consensus disorder prediction 375 402 - -
Cmetu06g1191 467 MobiDBLite consensus disorder prediction 293 313 - -
Cmetu06g1191 467 Pfam Protein of unknown function (DUF4005) 318 425 IPR025064 -
Cmetu06g1191 467 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1191 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1191 Cmetu-Chr6:193013 Cmetu11g0481 Cmetu-Chr11:2381900 8.70E-110 dispersed
Cmetu06g1191 Cmetu-Chr6:193013 Cmetu06g0713 Cmetu-Chr6:6974393 1.70E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0768 . 112 281 IQD Protein Family AT3G09710 58.2 7.1e-51 198.7
Cmetu09g0362 . 1 470 IQD Protein Family AT3G52290 53.3 3.8e-99 359.0
Cmetu02g0865 . 1 408 IQD Protein Family AT3G22190 57.1 2.2e-96 349.7
Cmetu07g0147 . 1 438 IQD Protein Family AT2G26180 60.2 2.3e-117 419.5
Cmetu07g1332 . 40 216 IQD Protein Family AT2G33990 55.0 5.4e-48 188.3
Cmetu07g1332 . 43 216 IQD Protein Family AT3G15050 63.3 9.0e-56 214.2
Cmetu11g0481 . 1 511 IQD Protein Family AT4G00820 50.6 5.9e-110 395.2
Cmetu06g1191 . 1 467 IQD Protein Family AT4G00820 50.3 6.9e-103 371.7
Cmetu02g1708 . 1 375 IQD Protein Family AT3G16490 50.1 1.9e-62 236.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54