Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1199 ATGGATCCTAAAACCTCATCAACAACAAAGCAGCCCCAAGAAGAAGTGGTACCCAACTTTTTTAAGCTCTCAGAAGAAGAAGCAGCAGCAGAAGAAGAAGAAATCATGGGTGAAAACAAACCAGCTGAAATCAAAGATTTTCAAATAGCAATTGCAGAGAAAGAAGAAGGAAAAAAACAGTTAGCCCCAAAAAGAAGCTCCAACAAAGACCGTCACACCAAAGTTGAAGGCAGAGGCCGAAGAATCCGTATGCCAGCTCTATGTGCTGCTAGGATTTTTCAATTGACCAGAGAATTGGGTCATAAATCCGACGGTGAGACCATCCAGTGGTTGCTACAGCAGGCGGAGCCGTCTATAATCGCCGCCACAGGCACCGGAACCATTCCTGCTTCTGCTCTAGCGGCGGCGGCTGGTTCTGTTTCACAACAGGGTGCTTCTTTGTCGGCCGGATTGCATCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGCGACCCCATTTGGCCGCCACTCCCACTGCCCTTTGGCCCTCCTCTGTCACTGGCTTTGGTTTTCAGTCTTCAACTGCCGCCGCTGCTGTTGCTGCTCAATCAGCTACTAATTTACCTAATGAAACTTCAAATTACTTTCACAAACTTGGTTTCCCACCTTTTGATTTAACCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCAAACACTCAACAATTACCAGGTTTGGAGCTTGGATTGTCCCAAGATGGTCATATTGGGGTCATAAATCCTCAAGCTCTCAACCAGATTTACCAACAGATGGGACAACCTAGAGTTCATCAACATCACCACCAGCAACCTCCTGCTAAGGATGATTCTCAAGATTCAGCCTAG 894 47.32 MDPKTSSTTKQPQEEVVPNFFKLSEEEAAAEEEEIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGRPHLAATPTALWPSSVTGFGFQSSTAAAAVAAQSATNLPNETSNYFHKLGFPPFDLTPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVINPQALNQIYQQMGQPRVHQHHHQQPPAKDDSQDSA 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21229327 21230369 + PI0011590.1 Cmetu06g1199 358861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1199 297 MobiDBLite consensus disorder prediction 54 77 - -
Cmetu06g1199 297 MobiDBLite consensus disorder prediction 1 42 - -
Cmetu06g1199 297 MobiDBLite consensus disorder prediction 1 15 - -
Cmetu06g1199 297 MobiDBLite consensus disorder prediction 275 297 - -
Cmetu06g1199 297 Pfam TCP family transcription factor 67 157 IPR017887 -
Cmetu06g1199 297 ProSiteProfiles TCP domain profile. 68 122 IPR017887 -
Cmetu06g1199 297 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 183 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1199 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1199 Cmetu-Chr6:21229327 Cmetu11g0058 Cmetu-Chr11:1637357 6.90E-44 dispersed
Cmetu06g1199 Cmetu-Chr6:21229327 Cmetu12g0790 Cmetu-Chr12:402509 1.70E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1538 . 43 260 TCP Transcription Factor Family AT5G23280 62.2 1.7e-64 243.0
Cmetu10g1064 . 34 256 TCP Transcription Factor Family AT5G23280 59.6 7.6e-60 227.6
Cmetu11g0225 . 56 314 TCP Transcription Factor Family AT2G45680 53.4 5.2e-62 235.3
Cmetu10g1669 . 69 163 TCP Transcription Factor Family AT3G47620 89.7 9.0e-41 165.2
Cmetu12g0790 . 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.3e-39 161.4
Cmetu10g0777 . 35 154 TCP Transcription Factor Family AT3G47620 65.9 1.0e-36 151.8
Cmetu10g0777 . 35 136 TCP Transcription Factor Family AT1G69690 77.9 6.9e-37 151.8
Cmetu06g1199 . 43 296 TCP Transcription Factor Family AT3G27010 54.6 3.6e-59 225.7
Cmetu10g1064 . 4 254 TCP Transcription Factor Family AT5G08330 55.7 1.3e-64 243.4
Cmetu09g1538 . 30 259 TCP Transcription Factor Family AT5G08330 60.6 2.9e-64 242.3
Cmetu10g0777 . 34 268 TCP Transcription Factor Family AT1G35560 50.2 8.8e-43 171.4
Cmetu02g1260 . 40 139 TCP Transcription Factor Family AT5G60970 76.2 2.1e-39 160.2
Cmetu07g0568 . 38 131 TCP Transcription Factor Family AT3G02150 77.1 9.8e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8061 PF03634 TCP 3.30E-31 No_clan Cmetu TF