Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1321 ATGTTAGAGAAAGGCAAAAATTCGGCTTTCACTACAGATTTCCATTACATATCACAATCCTCAAAATCTCCATTCTCACCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCTCTGTTTTCTTCAATTATTCTTCTCATTTCCCCATCTTCTTCACAAATTCTCACTCTTTCTTCACTTTCCATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTCGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTCTTGGTTAGAATCGAGAGTTCTGAGAATGCTTGGCCTCCGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAGGTTTCTGCTAGATTGACGTTTCCTATTTCTGTTAAACAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTTTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACCATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAGAGTCGTTCTTCTAGGCTTGTGGGCCTGAAACAAGTATCACCTAAAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTTCTATCGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCAAGCCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCGCCTCGGTGGCATGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATCGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGAGTTGCCGGACCTGAACATGAGAAGATAATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATTTGCCTAAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1344 44.2 MLEKGKNSAFTTDFHYISQSSKSPFSPSSSSSSSSSSLFSSIILLISPSSSQILTLSSLSMSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPPRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASSIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGVAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4729230 4732490 + PI0004619.1 Cmetu06g1321 358983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1321 447 ProSitePatterns Tub family signature 1. 377 390 IPR018066 -
Cmetu06g1321 447 SUPERFAMILY F-box domain 88 138 IPR036047 GO:0005515
Cmetu06g1321 447 Gene3D Tubby Protein; Chain A 152 447 IPR025659 -
Cmetu06g1321 447 SUPERFAMILY Tubby C-terminal domain-like 144 447 IPR025659 -
Cmetu06g1321 447 CDD F-box_AtTLP-like 95 139 - -
Cmetu06g1321 447 Pfam F-box domain 98 142 IPR001810 GO:0005515
Cmetu06g1321 447 FunFam Tubby-like F-box protein 152 447 - -
Cmetu06g1321 447 Pfam Tub family 156 442 IPR000007 -
Cmetu06g1321 447 ProSitePatterns Tub family signature 2. 432 447 IPR018066 -
Cmetu06g1321 447 PANTHER TUBBY-RELATED 70 445 - -
Cmetu06g1321 447 PRINTS Tubby superfamily signature 210 226 IPR000007 -
Cmetu06g1321 447 PRINTS Tubby superfamily signature 275 302 IPR000007 -
Cmetu06g1321 447 PRINTS Tubby superfamily signature 359 376 IPR000007 -
Cmetu06g1321 447 PRINTS Tubby superfamily signature 377 393 IPR000007 -
Cmetu06g1321 447 PRINTS Tubby superfamily signature 404 423 IPR000007 -
Cmetu06g1321 447 PRINTS Tubby superfamily signature 226 250 IPR000007 -
Cmetu06g1321 447 PRINTS Tubby superfamily signature 425 447 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1321 K19600 - - csv:101217713 800.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1579 Cmetu-Chr1:26695769 Cmetu06g1321 Cmetu-Chr6:4729230 4.70E-11 dispersed
Cmetu06g1321 Cmetu-Chr6:4729230 Cmetu07g1219 Cmetu-Chr7:4599524 9.50E-122 dispersed
Cmetu11g1152 Cmetu-Chr11:4425515 Cmetu06g1321 Cmetu-Chr6:4729230 5.20E-177 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT1G76900 73.4 1.9e-178 622.5
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 1.6e-169 592.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT1G76900 69.3 6.2e-169 590.9
Cmetu11g1152 . 13 386 TUB Transcription Factor Family AT1G76900 50.6 4.4e-114 408.7
Cmetu06g0547 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.6e-102 367.1
Cmetu03g0268 . 173 430 TUB Transcription Factor Family AT1G25280 69.4 4.6e-95 344.7
Cmetu03g0406 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.1e-93 340.1
Cmetu06g1321 . 214 447 TUB Transcription Factor Family AT1G25280 53.9 1.0e-70 263.8
Cmetu07g1219 . 177 414 TUB Transcription Factor Family AT1G25280 55.8 3.0e-70 262.3
Cmetu04g0475 . 180 411 TUB Transcription Factor Family AT1G25280 53.4 6.2e-68 254.6
Cmetu11g1152 . 154 386 TUB Transcription Factor Family AT1G25280 53.6 5.2e-67 251.5
Cmetu08g0022 . 176 414 TUB Transcription Factor Family AT1G25280 51.7 1.2e-63 240.4
Cmetu11g1152 . 98 386 TUB Transcription Factor Family AT5G18680 62.8 5.8e-99 357.8
Cmetu06g1321 . 158 447 TUB Transcription Factor Family AT5G18680 62.8 3.2e-97 352.1
Cmetu03g0268 . 112 430 TUB Transcription Factor Family AT5G18680 53.4 2.8e-85 312.4
Cmetu03g0406 . 112 432 TUB Transcription Factor Family AT5G18680 51.8 3.4e-83 305.4
Cmetu06g0547 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.3e-82 303.5
Cmetu07g1219 . 115 414 TUB Transcription Factor Family AT5G18680 52.5 3.0e-79 292.4
Cmetu07g1219 . 1 414 TUB Transcription Factor Family AT2G18280 61.9 3.5e-144 508.4
Cmetu08g0022 . 1 414 TUB Transcription Factor Family AT2G18280 59.8 1.1e-134 476.9
Cmetu04g0475 . 1 411 TUB Transcription Factor Family AT2G18280 60.2 6.6e-127 451.1
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 3.0e-119 425.6
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT2G18280 52.3 8.1e-117 417.5
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT2G18280 54.3 1.4e-116 416.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.2e-112 403.7
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT2G18280 52.7 1.8e-111 399.8
Cmetu07g1074 . 48 379 TUB Transcription Factor Family AT2G18280 50.7 3.0e-95 345.9
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT2G47900 68.5 1.6e-160 562.8
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT2G47900 67.7 9.8e-158 553.5
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT2G47900 55.7 1.9e-132 469.5
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 1.0e-130 463.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 1.7e-130 463.0
Cmetu07g1219 . 1 414 TUB Transcription Factor Family AT2G47900 56.4 1.0e-122 437.2
Cmetu04g0475 . 10 411 TUB Transcription Factor Family AT2G47900 55.5 1.9e-116 416.4
Cmetu08g0022 . 1 414 TUB Transcription Factor Family AT2G47900 51.3 9.6e-113 404.1
Cmetu07g1074 . 49 379 TUB Transcription Factor Family AT2G47900 51.0 8.5e-101 364.4
Cmetu01g1579 . 82 297 TUB Transcription Factor Family AT1G16070 63.2 7.5e-75 277.7
Cmetu03g0268 . 67 430 TUB Transcription Factor Family AT1G43640 70.6 8.2e-148 520.4
Cmetu06g0547 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 1.0e-145 513.5
Cmetu03g0406 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 1.5e-141 499.6
Cmetu06g1321 . 109 447 TUB Transcription Factor Family AT1G43640 53.4 2.3e-105 379.4
Cmetu11g1152 . 47 386 TUB Transcription Factor Family AT1G43640 51.9 2.3e-105 379.4
Cmetu04g0475 . 69 411 TUB Transcription Factor Family AT1G43640 50.5 2.4e-99 359.4
Cmetu08g0022 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 4.0e-94 342.0
Cmetu04g0475 . 34 411 TUB Transcription Factor Family AT1G47270 63.1 1.2e-133 473.4
Cmetu07g1219 . 34 414 TUB Transcription Factor Family AT1G47270 58.0 1.3e-122 436.8
Cmetu08g0022 . 33 414 TUB Transcription Factor Family AT1G47270 56.6 2.7e-120 429.1
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.7e-114 409.8
Cmetu03g0268 . 30 430 TUB Transcription Factor Family AT1G47270 51.7 2.0e-112 402.9
Cmetu03g0406 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 3.5e-112 402.1
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT1G47270 51.0 3.1e-108 389.0
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT1G47270 50.2 2.7e-104 375.9
Cmetu07g1074 . 1 379 TUB Transcription Factor Family AT1G53320 71.1 3.3e-155 545.0
Cmetu07g1219 . 20 414 TUB Transcription Factor Family AT1G53320 50.9 4.9e-103 371.7
Cmetu11g1152 . 22 386 TUB Transcription Factor Family AT1G53320 50.4 4.9e-103 371.7
Cmetu06g1321 . 158 447 TUB Transcription Factor Family AT3G06380 63.8 3.1e-97 352.1
Cmetu11g1152 . 98 386 TUB Transcription Factor Family AT3G06380 62.1 1.4e-94 343.2
Cmetu06g0547 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 6.2e-82 301.2
Cmetu03g0268 . 116 430 TUB Transcription Factor Family AT3G06380 51.6 9.0e-81 297.4
Cmetu03g0406 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 2.6e-80 295.8
Cmetu07g1219 . 119 414 TUB Transcription Factor Family AT3G06380 54.1 4.5e-80 295.0
Cmetu04g0475 . 120 411 TUB Transcription Factor Family AT3G06380 51.8 4.2e-78 288.5
Cmetu08g0022 . 118 414 TUB Transcription Factor Family AT3G06380 50.2 9.6e-75 277.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8070 PF01167 Tub 1.00E-110 CL0395 Cmetu TF