Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1325 ATGCAGCTTCTTAACTCTGACGAAACGGTCGCCGACTCCTCGGAAACCGGTCTTGTGGAGTCAAGAAATTTGAAATCTTCTGAGTTGGTTTCGTTTGAGGATGACAATGGAAATGATGCTGATGATTCGGTTCTTGATGTATCGGGAAGAAACTTGGATTCCAATTTCTTGGAGGGTTCCAGCAGCTCAGTGAAGGGTCTGTATGTTTTTCGGAATGCATTCAATTTGATCCCGAAATCAGTTGGTGACTTTAGAGAATTGAGAATGCTTAAGTTCTTTGGAAACGAGATTAACTTGTTTCCGTCAGAATTGAAGAACTTTGTGGGGTTAGAATGCTTGCAGGTGAAGTTATCCTCACCGGGTTTTGGTGGTTTATCATTGCACAAACTGAAGGGTCTGAAGGAGCTTGAGCTATCGAAGATTCCTCCTAAGCCTTCCTCGTTTCCAATTCTTAGCGAGATCGCTGGCCTTAAGTGCTTGACTAAGCTCTCTGTTTGTCACTTTTCTATTAGATTTCTTCCTCCTGAAATTGGCTGCCTGAATAGTTTGGAGTATCTGGATCTCTCATTTAATAAGCTGAAGAGCCTTCCAGCAGAAATAGGCTATTTGAATTCCTTGATATCCTTGAGAGTTGCCAATAACAAATTGGTGGAACTGCCTCCTGCTTTGTCTTCCCTGCAAAAGCTGGAGAACTTGGATCTGTCAAGTAATAGGTTAACATCATTGGGGTCTCTTGAACTTGTATCAATGCATAGCCTTAGAAACTTGAATTTACAGTACAATAAATTTCTGAAAAGCTGTCAGATACCCTCCTGGATATGCTGTAATTTTGAAGGAAATCTTGAAGATGATACAGCCAATGAAGAATGGATTAGTTCCACGGTTGAAATGGATGTTTATGAAGCCACCATTCAAGACAATGAGAGTAGTTTTCCTCTTAAAGGTACTCGTAACCTTTCATCAAACCTATTAATGGGACCTTCAACGAATAGTAGATCCTTTGCATCTAAAAGATCAGGTAAGCGATGGCGGAGACGGCATTATTTACAGCAGAAAGCTCGCCAGGAACGCTTGAACAGCAGCAGGAAGTGGAAAGGAGTAGATCATCATACTGAAGTGAAGATCCACGAAAATCATGAACCTGAGAGGCTTGATTCTGCTCCTATTTCTGAAACTACAGTTGAAGATACATCGGCTATTGATGAATTATTTGATACTAAAGAAACATGCGATGTGGGAACTGAAAGAGAAAATCATATCGAGAGCCATGAGAATGACGATTTTGATCCCAAAAAGGAATTTTCTGTGGAGGATTGTTCAAGCATCTGTGATGCTGCTGCAGAAACAATGACAAGGGATGAAAATGAATGTTGTGAGACTAGTGAGACTTTGCCACCGACAGGAAATGGAGCACATGACCGAGAGGGGTCATCTTCACAAGTATCAAAGGATAATGCTAAGTTGAAAAGATATTCTGAGAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGCCAGTTGAAGACAGCTCAAGTTTATCTTGCAAGTACAATAGTACCTCTTTTTGCAATGTGGAGGATTATTTGCCTGATGGATTTTATGATGCCGGGCGTGATCGCCCCTTCATGCCATTAAGGAATTATGAGCAAAATTTCCATCTTGATTCACGTGAAGTCATTATCGTTAACAGGGAACACGATGAAGTATTAGATTCTATAACAGTAGCTGCCAAGTCATTGATACTCCGTCTAAAGCAGATTAACCACCTAACCCAGGAAAGAGATCAAGTTATTGATGATGTGTATATTGCACAATTACTTGCTTTATTTGTATCTGATCATTTCGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAGAGCTGTTTCTGGTTCAAAGTATCAAAAGCCTTTTGTCTGCACCTGCTCAACTGGAGATCGGGATAATCTTGCTTCGTCCACCAAATCGATGGTGGATAATTATGAGGATATTCTTCTTACCGATATCTGTGAGAAGTCTCTTCGTTCTATTAAAGCTAGTCGAAATTCCATCATAGTTCCTCTAGGAGCTTTGCAGTTTGGTGTGTGCAGACATAGAGCTCTGCTACTTAAGTATTTGTGTGATCGTATGGAGCCTCCAGTACCTTGTGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCTCATGCCTGGAATGTGATCTTAGTGAAAAGAGGTAATACGTCGGTTCGAATGGTTGTTGATGCATGCCGACCAAATGATATACGAGAAGAAGCAGATCCTGAATATTTTTGTAGGTATATACCTCTCAGTCGTGCCAAACTTCCTATTTCTTTTGGGATTGCATCCAGTCCAGGGATTTCCTTTCCGTCTCTTTCCAATTGTGATGAGATTGAGAAGGCTCCTTCTAGTTCTGTAATAAAATGCAAACTTGCGTCAGTTGAGGCTGCAGCAAAGTTACGGAAACGTGAAGTTTGTGAATCTTCATTTGAAGAGATAAGAAACTTTGAATTCAGTTGCTTAGGTGAAGTCAGAATTCTGGGTGCTTTGAAACACTCATGCATAGTACAGATGTATGGACATCAGATATCTTCTGAATGGATTCCTTCTGAAAATGGAAAACCAAAGCGTCGATTACTTAGGTCTGCAATTTTCTTAGAGCATGTTAAAGGTGGATCTTTGAAGGGCTACATGGACAAGTTGTACAAAGCTGGGAAAAAACATATTCCAATGGATTTGGCATTGCATGTTGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCAAAGCACATCATTCATCGAGACATCAAAAGTGAAAATATTTGA 2838 40.63 MQLLNSDETVADSSETGLVESRNLKSSELVSFEDDNGNDADDSVLDVSGRNLDSNFLEGSSSSVKGLYVFRNAFNLIPKSVGDFRELRMLKFFGNEINLFPSELKNFVGLECLQVKLSSPGFGGLSLHKLKGLKELELSKIPPKPSSFPILSEIAGLKCLTKLSVCHFSIRFLPPEIGCLNSLEYLDLSFNKLKSLPAEIGYLNSLISLRVANNKLVELPPALSSLQKLENLDLSSNRLTSLGSLELVSMHSLRNLNLQYNKFLKSCQIPSWICCNFEGNLEDDTANEEWISSTVEMDVYEATIQDNESSFPLKGTRNLSSNLLMGPSTNSRSFASKRSGKRWRRRHYLQQKARQERLNSSRKWKGVDHHTEVKIHENHEPERLDSAPISETTVEDTSAIDELFDTKETCDVGTERENHIESHENDDFDPKKEFSVEDCSSICDAAAETMTRDENECCETSETLPPTGNGAHDREGSSSQVSKDNAKLKRYSERELDNPKPCKSRKPVEDSSSLSCKYNSTSFCNVEDYLPDGFYDAGRDRPFMPLRNYEQNFHLDSREVIIVNREHDEVLDSITVAAKSLILRLKQINHLTQERDQVIDDVYIAQLLALFVSDHFGGSDRSAMVEKTRRAVSGSKYQKPFVCTCSTGDRDNLASSTKSMVDNYEDILLTDICEKSLRSIKASRNSIIVPLGALQFGVCRHRALLLKYLCDRMEPPVPCELVRGYLDFLPHAWNVILVKRGNTSVRMVVDACRPNDIREEADPEYFCRYIPLSRAKLPISFGIASSPGISFPSLSNCDEIEKAPSSSVIKCKLASVEAAAKLRKREVCESSFEEIRNFEFSCLGEVRILGALKHSCIVQMYGHQISSEWIPSENGKPKRRLLRSAIFLEHVKGGSLKGYMDKLYKAGKKHIPMDLALHVARDVASALVELHSKHIIHRDIKSENI 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3871184 3879756 - PI0000165.1 Cmetu06g1325 358987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1325 945 Pfam Ethylene-responsive protein kinase Le-CTR1 672 750 - -
Cmetu06g1325 945 SMART LRR_typ_2 226 249 IPR003591 -
Cmetu06g1325 945 SMART LRR_typ_2 203 225 IPR003591 -
Cmetu06g1325 945 SMART LRR_typ_2 250 276 IPR003591 -
Cmetu06g1325 945 SMART LRR_typ_2 180 201 IPR003591 -
Cmetu06g1325 945 Pfam Protein kinase domain 807 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu06g1325 945 SMART LRR_bac_2 203 222 - -
Cmetu06g1325 945 SMART LRR_bac_2 180 199 - -
Cmetu06g1325 945 SMART LRR_bac_2 226 245 - -
Cmetu06g1325 945 PRINTS Leucine-rich repeat signature 183 196 - -
Cmetu06g1325 945 PRINTS Leucine-rich repeat signature 226 239 - -
Cmetu06g1325 945 FunFam At1g04210 118 304 - -
Cmetu06g1325 945 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
Cmetu06g1325 945 SUPERFAMILY Protein kinase-like (PK-like) 789 945 IPR011009 -
Cmetu06g1325 945 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Cmetu06g1325 945 SUPERFAMILY RNI-like 56 271 - -
Cmetu06g1325 945 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 110 945 - -
Cmetu06g1325 945 Gene3D Transferase(Phosphotransferase) domain 1 799 945 - -
Cmetu06g1325 945 SMART LRR_sd22_2 226 247 - -
Cmetu06g1325 945 SMART LRR_sd22_2 180 205 - -
Cmetu06g1325 945 MobiDBLite consensus disorder prediction 454 515 - -
Cmetu06g1325 945 MobiDBLite consensus disorder prediction 1 21 - -
Cmetu06g1325 945 Gene3D Ribonuclease Inhibitor 20 290 IPR032675 -
Cmetu06g1325 945 MobiDBLite consensus disorder prediction 486 507 - -
Cmetu06g1325 945 MobiDBLite consensus disorder prediction 322 346 - -
Cmetu06g1325 945 MobiDBLite consensus disorder prediction 322 336 - -
Cmetu06g1325 945 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
Cmetu06g1325 945 MobiDBLite consensus disorder prediction 460 485 - -
Cmetu06g1325 945 ProSiteProfiles Protein kinase domain profile. 794 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1325 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1325 Cmetu-Chr6:3871184 Cmetu07g0395 Cmetu-Chr7:23292004 8.70E-08 dispersed
Cmetu01g2398 Cmetu-Chr1:23581214 Cmetu06g1325 Cmetu-Chr6:3871184 9.70E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70514 PF00069 Pkinase 4.10E-11 CL0016 Cmetu PK