Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1355 ATGGAGAAGTCTAGATCTAAGAGGAATTACTACTATGACCACCAAGACTATGATTCCGAGTCGATGGGTAGAACCAGACCTCGTTACAACAACAATCACTACCCCAATAATAATTATCGTCATCGTGGAAATGCTGTTCGACCCTCTAAACCTCAAGACCAATCTCTTATGGTCACCACTACTTACAGGATACTTTGTCATGATGCTAAAGCTGGGGGAGTTATTGGCAAATCTGGTAGTATTATTAAGTCTATAAGGCAGCATACCGGCGCGTGGATCAACGTGCATGAGCTTGTTCCTGGTGATGAGGAGAGGATAATTGAGATTTCGGATACTCGGCGGCGGGACCCGGAAGGTCGGATGCCGTCGTTCTCTCCGGCTCAAGAAGCGCTTTTTTTGATTCATGAAAGGATTCTTGAGAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTCCTGAGGATGAGGAGGATGATTATGGTGGTGTTAGAGGAGGAGGTGGTGGCGGTTGCGGTGGTCGTGTGGCGACAAGGCTTGTCGTGTCTAGAATGCACGTTGGTTGTTTGCTTGGGAAGGGAGGGAAGATAATCGAGCAAATGAGGATGGAAACCAAGACCCAGATAAGGATTCTACCTAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCTGAGGAGATTGTTCAGATTGTTGGAGATACAAATGCCGTTAAAAAAGCTATAGCTATTGTTTCATCACGCTTGAGAGAGAGTCAGCATCGTGACCGTAGTCATTTCCATGGGCGTCTACATTCACCAGAGCGCATTTTCCCTCCTGATGATGATTATGTTCCACATAACGCAAGGCGATTACCAATGGATGGACGGCCATTTAGACCACGCATGTCTGCTTCTAATACAAGAGGCAATGATTATCCCAACCGTCAGTCTAATTTTATGGTGGAGCCTGGGGCTGCTCCTGTAAATGACAACATGATGCCCTTTTATGGCGAGGACCTTGTATTTAGAATATTATGCCCAATTGAGAAGGTAGATAGTGTTATTGGAGAGTCTAATGGAATCATAGAATTACTTCGTAATGATGTTGGTGTGGATATCAAGGTTTCTGATCCTGTGACTGGTTCGAACGAACAGATTCTTATCATTTCCTCGGATGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTATTACACATCCAAACTCGCATTGTTGATCTTATTCCTGATAAGGAGAACATTGTAACTACTAGGTTACTTGTACCATCAAGTGATATTGGATATTTGGAGGTAAGAGATGGATCATTGTTAGAGATGAAGAGATTAACCGGTGCAAATGTACATATTGTGCCAAGAGAAGACCTTCCCATGTTTGTATCAGGGGCGGATGAGCTTGTACAGATCATAGGGGACATAAAAGCAGCTCGAGATGCACTTGTTGAGTTAACATCAAGATTACGGAATTGCCTTTATAAGGAGCCGTTCCAAAAAGATGCAAGCCCTCAAGTATCAGTACAAAGCACCATTCTCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTGCAGCTCGTGAAGTTCATAGTGGAAATGATTCTGCAAGCACAGCCTTTCAAAACGTGCAACCTTTTGGAACAGCACAGCTTTTAAAGGAAACTGGAGGATCGAGCAATGAAACTGGTACGCAGAATGAAAATGACCGACGTGAAGATTTGGCTAGTGGGTTAAATAGGATACCTGTGCCGCTTGTCACCCGGAGTACGCTCGAAGTTGTGATACCAGAGCCTGCAGTCCCCAAGCTTATAACAAAATCAAAAAACAAGCTTGCTCAGATCAGTGAGTTATCCGGAGCCAATGTTACATTGGTAGAAGATAGACCAGATGTAACCCAGAAGATAATTCAAATATCAGGCACACCGGAGCAAGCTGAGAGAGCCCAGAGCTTGTTGCAAGGCTTTATTTTGAGCTTGCAAGAAGATGGGCCATAA 2001 44.03 MEKSRSKRNYYYDHQDYDSESMGRTRPRYNNNHYPNNNYRHRGNAVRPSKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGGGGGCGGRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDTNAVKKAIAIVSSRLRESQHRDRSHFHGRLHSPERIFPPDDDYVPHNARRLPMDGRPFRPRMSASNTRGNDYPNRQSNFMVEPGAAPVNDNMMPFYGEDLVFRILCPIEKVDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLIPDKENIVTTRLLVPSSDIGYLEVRDGSLLEMKRLTGANVHIVPREDLPMFVSGADELVQIIGDIKAARDALVELTSRLRNCLYKEPFQKDASPQVSVQSTILSLGLEESSSNNNAAAREVHSGNDSASTAFQNVQPFGTAQLLKETGGSSNETGTQNENDRREDLASGLNRIPVPLVTRSTLEVVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSLQEDGP 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8327867 8332647 + PI0028724.1 Cmetu06g1355 359017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1355 666 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 582 662 IPR036612 GO:0003723
Cmetu06g1355 666 Gene3D K Homology domain, type 1 172 254 IPR036612 GO:0003723
Cmetu06g1355 666 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 52 309 - -
Cmetu06g1355 666 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 256 IPR036612 GO:0003723
Cmetu06g1355 666 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 326 386 IPR036612 GO:0003723
Cmetu06g1355 666 CDD KH-I_PEPPER_rpt1_like 333 401 - -
Cmetu06g1355 666 MobiDBLite consensus disorder prediction 16 51 - -
Cmetu06g1355 666 CDD KH-I_PEPPER_rpt2_like 178 250 - -
Cmetu06g1355 666 Gene3D - 332 496 - -
Cmetu06g1355 666 ProSiteProfiles Type-1 KH domain profile. 590 654 - -
Cmetu06g1355 666 ProSiteProfiles Type-1 KH domain profile. 333 400 - -
Cmetu06g1355 666 Gene3D K Homology domain, type 1 589 660 IPR036612 GO:0003723
Cmetu06g1355 666 MobiDBLite consensus disorder prediction 253 309 - -
Cmetu06g1355 666 Pfam KH domain 178 245 IPR004088 GO:0003723
Cmetu06g1355 666 Pfam KH domain 592 655 IPR004088 GO:0003723
Cmetu06g1355 666 Pfam KH domain 61 110 IPR004088 GO:0003723
Cmetu06g1355 666 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Cmetu06g1355 666 CDD KH-I_PEPPER_rpt1_like 59 132 - -
Cmetu06g1355 666 MobiDBLite consensus disorder prediction 24 51 - -
Cmetu06g1355 666 Gene3D K Homology domain, type 1 58 141 IPR036612 GO:0003723
Cmetu06g1355 666 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 411 496 IPR036612 GO:0003723
Cmetu06g1355 666 ProSiteProfiles Type-1 KH domain profile. 175 245 - -
Cmetu06g1355 666 MobiDBLite consensus disorder prediction 253 290 - -
Cmetu06g1355 666 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 52 112 IPR036612 GO:0003723
Cmetu06g1355 666 SMART kh_6 332 405 IPR004087 GO:0003676
Cmetu06g1355 666 SMART kh_6 589 659 IPR004087 GO:0003676
Cmetu06g1355 666 SMART kh_6 58 139 IPR004087 GO:0003676
Cmetu06g1355 666 SMART kh_6 416 490 IPR004087 GO:0003676
Cmetu06g1355 666 SMART kh_6 174 250 IPR004087 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1355 K21444 - - csv:101217605 1234.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1355 Cmetu-Chr6:8327867 Cmetu09g1584 Cmetu-Chr9:19903933 5.30E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37