Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1412 ATGATGGAGTGGGAAAAACCTGAGCAGCAAAATCCTTACCACCACCACAACCCTCCTCTTTGTGACGATCATCTCCATCACCTCACCGGAACTACGGCCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGACCAATTGGAGACTCTTCGCAAACAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACCCTTACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGAGGTGGACTCCGACGCCTGTGCAGCTTCAGATCTTAGAGCGTATATTCGACCAAGGGAATGGAACTCCCAGCAAGCAAAAGATCAAAGAGATAACCTCTGAACTGGGGCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAAAGTGCCGCACCTGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAATCACCAAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTAATCAATCCTCTGCACCTTTGGGGGACGACATGTGCTTTCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAATCAGCAAGAAGCTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGACAGGAAAGATTGAAACGCCAGAGAACTATAGTATCTTCCAGCAAGCAGAAGGCTACAACATGACGGAACGACCATGA 843 47.09 MMEWEKPEQQNPYHHHNPPLCDDHLHHLTGTTAAGALYVKVMTDDQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSAAPAYGESEVETEVESPKDKKTKPVDFQTNQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKSARSFSQMSFYEAGNEQLTGKIETPENYSIFQQAEGYNMTERP 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30669310 30672816 - PI0028361.1 Cmetu06g1412 359074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1412 280 Gene3D - 103 167 - -
Cmetu06g1412 280 MobiDBLite consensus disorder prediction 176 190 - -
Cmetu06g1412 280 PANTHER WUSCHEL-RELATED HOMEOBOX 13 15 276 IPR044559 GO:0003700
Cmetu06g1412 280 MobiDBLite consensus disorder prediction 160 202 - -
Cmetu06g1412 280 SUPERFAMILY Homeodomain-like 97 165 IPR009057 -
Cmetu06g1412 280 CDD homeodomain 101 163 IPR001356 GO:0003677
Cmetu06g1412 280 SMART HOX_1 99 166 IPR001356 GO:0003677
Cmetu06g1412 280 ProSiteProfiles 'Homeobox' domain profile. 97 162 IPR001356 GO:0003677
Cmetu06g1412 280 Pfam Homeodomain 101 161 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1412 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1412 Cmetu-Chr6:30669310 Cmetu07g0405 Cmetu-Chr7:24487402 4.60E-74 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1142 . 1 193 Wox Gene Family AT3G18010 51.5 1.1e-40 164.5
Cmetu04g2331 . 4 253 Wox Gene Family AT3G03660 50.2 1.4e-52 203.8
Cmetu06g1412 . 1 277 Wox Gene Family AT4G35550 51.0 1.1e-72 270.4
Cmetu07g0405 . 1 188 Wox Gene Family AT4G35550 62.2 2.5e-56 216.1
Cmetu04g1771 . 1 373 Wox Gene Family AT2G33880 50.5 1.2e-67 254.2
Cmetu12g1142 . 1 193 Wox Gene Family AT3G18010 51.5 1.1e-40 164.5
Cmetu04g1771 . 1 373 Wox Gene Family AT2G33880 50.5 1.2e-67 254.2
Cmetu04g2331 . 4 253 Wox Gene Family AT3G03660 50.2 1.4e-52 203.8
Cmetu06g1412 . 1 277 Wox Gene Family AT4G35550 51.0 1.1e-72 270.4
Cmetu07g0405 . 1 188 Wox Gene Family AT4G35550 62.2 2.5e-56 216.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8076 PF00046 Homeodomain 1.30E-18 CL0123 Cmetu TF