Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1465 ATGTGTGACGCGAAGGAGAAACTGGAATCTGTACAAGATGTATCAACTGCTTTAAGTGAAGGAAACCAAGTTAATGCAAAAGAAGATGTGCTCCATGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGATTGATTCACCTGAAACTCGTGTACAGGAAATTGTACCGCTTGAGGATAATTTAGATAAACCTACAATTCTTCAGCAATCCAATCAAAATTCTGGGCATTCACTTCCCATGGATTATGACCAAGAGCTGGATAAGCCTGATGCAGAGCCTGCTTCTGATGTCAAGTCTGGCCCTGTTGAGTTACCCCCAAGGGATCTAGATGCTGCTGTTTCCAGCTCTCCCCTAGAAACTGTTCAGTCCTCCATGGATGCCAAAGCTGATGCCTTTGAGATGCCTGAAATTAAAACCTGTTCTCTTGATGATGCTTCAACAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTAAAAGCTGAAACAGAAAATGCCATAGAATTGAAGGTCAATGAAGACATTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCGTTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGCGAGGGTCTGAATTGCCTCAAGTTGTGGAGGGCTGTGACTAGGTTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGTCAAGTAGGAGAGTCTTTCAAGCCTCCAAAGACATGCACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGTGAACTTAGTGTACCTATTACTTCCAACGCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGACAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAGCTAAAAAGCATTGTTCTTAAACGTAAGAAACCATCTTACATGGAGCACCCCATGAAATCAACACGTACAAAATCACCGAAACCACAGTTGGACGTAGCCGTAGTTGATATTGGACAACCAGCTGACTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGCGAGGAGGTGCGTGTTCAGTCTGATCCGGCAGGACGCTTGGTCATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACACCCTTTAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1530 44.12 MCDAKEKLESVQDVSTALSEGNQVNAKEDVLHDSLSVPAEATPNSCEKEIDSPETRVQEIVPLEDNLDKPTILQQSNQNSGHSLPMDYDQELDKPDAEPASDVKSGPVELPPRDLDAAVSSSPLETVQSSMDAKADAFEMPEIKTCSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDIVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPITSNAEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIVLKRKKPSYMEHPMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30818878 30823606 - PI0004548.1 Cmetu06g1465 359127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1465 509 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 409 509 IPR002068 -
Cmetu06g1465 509 MobiDBLite consensus disorder prediction 69 85 - -
Cmetu06g1465 509 MobiDBLite consensus disorder prediction 313 338 - -
Cmetu06g1465 509 Pfam Hsp20/alpha crystallin family 426 506 IPR002068 -
Cmetu06g1465 509 ProSiteProfiles ARID domain profile. 216 307 IPR001606 GO:0003677
Cmetu06g1465 509 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 78 507 IPR045147 GO:0006357
Cmetu06g1465 509 FunFam AT-rich interactive domain-containing protein 3 216 315 - -
Cmetu06g1465 509 Pfam ARID/BRIGHT DNA binding domain 219 303 IPR001606 GO:0003677
Cmetu06g1465 509 SUPERFAMILY ARID-like 210 315 IPR036431 GO:0003677
Cmetu06g1465 509 FunFam AT-rich interactive domain-containing protein 3 401 509 - -
Cmetu06g1465 509 CDD ARID 221 303 - -
Cmetu06g1465 509 MobiDBLite consensus disorder prediction 1 125 - -
Cmetu06g1465 509 SUPERFAMILY HSP20-like chaperones 420 505 IPR008978 -
Cmetu06g1465 509 SMART bright_3 217 308 IPR001606 GO:0003677
Cmetu06g1465 509 CDD ACD_sHsps-like 424 504 - -
Cmetu06g1465 509 SMART ARID_2 213 303 - -
Cmetu06g1465 509 Gene3D - 216 314 IPR036431 GO:0003677
Cmetu06g1465 509 Gene3D - 408 509 IPR008978 -
Cmetu06g1465 509 MobiDBLite consensus disorder prediction 313 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1465 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1114 . 19 384 ARID Transcription Factor Family AT1G04880 55.9 1.1e-104 377.5
Cmetu06g1465 . 208 477 ARID Transcription Factor Family AT1G20910 61.0 2.5e-89 326.2
Cmetu07g1207 . 16 310 ARID Transcription Factor Family AT1G76110 68.5 2.1e-113 406.0
Cmetu06g1465 . 187 507 ARID Transcription Factor Family AT1G76510 59.5 7.6e-108 387.9
Cmetu04g1213 . 1 770 ARID Transcription Factor Family AT3G43240 59.7 3.6e-267 917.9
Cmetu01g0203 . 2 771 ARID Transcription Factor Family AT3G43240 57.5 2.1e-259 892.1
Cmetu01g1064 . 32 771 ARID Transcription Factor Family AT3G43240 59.1 3.6e-259 891.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8078 PF00011 HSP20 8.40E-06 CL0190 Cmetu TR