Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1582 ATGTCTCTCCGCAACCATGGTGATGAAATTGACGTTGAGCATCTTGCTGACAAGGAAGATGGTGTGGTTGATGAGGACATGGAAGTTCTTCAGAGAGCCTATAGGCTTGTTGGTGTTAATCCCAGGTTGTCATCACCTACTGTCGGTGATGCTGATCCTGGTTCTGATTCTGATGACGTTGATGATTTTGAACTTCTTCGAAATATTCAGAACCGGTTCTCGATTGTGGCTGATGAGCAGGTGAGTATTCTCCCACAAGTGTCTGCAGAAGAGGAGGAAGATGAATTTGAGATACTTCGTTCGATACAGCGGCGCTTTGCAGCGTATGAAAGTGATACTTTGAGCAATGAACCCAATCAGTCTCGTGACTATGTTGGGTCTCTGAAGAGGGATTCTGATGACATAGCTGTTGAGAGCCAGACATCCTCTAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCATTGGCATTTGTTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTGCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAGCGAAGAACAAGTTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTAATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGAGTATCTGGAATGTATTATGGCCCGGCTGAGAATTCTCATGTTGCGTGTTACAGAATGGCAATGGCGAAGTTTCCCCGTGTGGATCGAAAGAAATGGTCCATTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAGTTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATCAGTGGGCCACAAGGAGTTTCTGGAGATTCAGACGATTTAGATAACATTCTTGCATCCATAAAAGACCTTGACATCGCTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAACTTGGCTTCCATGTATCTTCAGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGAGATCCATGGACTACAAGTGAGGATAAAAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCATTGGGCACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGCGTGAGAGATTGGCAGGCAGTAGCTTCTGCTTTGGAAGGACGAGCTGGCACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCCAAAATTGGAACAAGAAAGCAGAATTTTTGCCTGGTCGGAATCAAGTTCAATGCAGAGAAAGGTGTATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAGTGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCATCACGAACAGATAATGAGTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAAACAGAGCGTCCTGCTCTTGGTCCCGCTGACTTTCGACCCAGGCCAAATACAGATTTATTATGTAACACTGATGGTCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTACCAGAGGTTTCAGACTGATGCAACTGCTCAGGAGGGTATTGCAAATAATACCTCTGTTGTCCCAGAAGAGGTTCAATCTTCAAAGCCTCAAAGAAAACGAAATAGACGCGGAGCTTATACTGCAAAGAGAGTAGGGGTACCGGAGCTACGTTCTGACAGCGAGTGGTGTGCTAAACAGAATTTGGACACTCACAGCCTTGGGTTGCAGCTGAATAGTAAGGAATCTGAGAGGACCAACAGTGACTGCACCGAGACTGTTGATGAGAATATTATGGAAGTTTTTGAGAACAAAGTTGCAGAGAAGCTTACTGAAAAAAATGCATGCTTTTCAGAACCAGAAAAAAATCAAAACTCAACCGGATCTTCTGGAGTCTCGGTATTGTCGGAAATGACTAACGACTTGGTTGACTATAATCCCTCTATCCTCACAGATACAACATTGTTGGCCAGTACTACCGTGGATGATATCGAAGAATTGAAGGGGAAGAGTGTTGCAGAAAGGGATCTGGATGACAGTAACAGTGTCTCGTTACCGCACAGTTGCTTAGAACTCCGGACAATTGACTGTGAAGGTGTAGACAGTTATTCTGTGGACGAATTTACAGCTAAAAGCAATGGGGTTTGCAATCCCACCCAAGGCAGAAGGAAGAAAAATAGCAAAACATCAAATAACAGCCATGATTATTTGTTTCTTTCTCGTCAACAAATTGAGCAAGAGACGTCGGGAACTAACAAGCCTCATTGTCACAATCAATCAAAGAAGAGAGAACATAACAATACAGGTACAAGTACGTTAGGAACATTGGAGGCAGTTGAGGAGGTTGATGACTGCACTCTCGTGGGGTTTTTGCAAAAAAGATTGAAGAGGACAATGACACATAACGAGACAGTTGATTGCAGTTCTAGTACTCCTTTAGAAGTTGATAATGAGCCTACCATTGCCTCGTTTCTTTATAAATTGAAGAGAAAAAAGCATCAGCGGCCTAGTGGTGGTGAGTTAAATTAA 2991 42.93 MSLRNHGDEIDVEHLADKEDGVVDEDMEVLQRAYRLVGVNPRLSSPTVGDADPGSDSDDVDDFELLRNIQNRFSIVADEQVSILPQVSAEEEEDEFEILRSIQRRFAAYESDTLSNEPNQSRDYVGSLKRDSDDIAVESQTSSKRPSMLAFEKGSLPKAALAFVDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRCKILKDFQGSCKRRTSCALSQMIDPRVQLISAAKPQAKDSSKKDKRVSGMYYGPAENSHVACYRMAMAKFPRVDRKKWSIVERENLGKGIRQQFQEMVLQISVDQISGPQGVSGDSDDLDNILASIKDLDIAPEKIREFLPKVNWDNLASMYLQGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVRDWQAVASALEGRAGTQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKIGTRKQNFCLVGIKFNAEKGVWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRETERPALGPADFRPRPNTDLLCNTDGPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNYQRFQTDATAQEGIANNTSVVPEEVQSSKPQRKRNRRGAYTAKRVGVPELRSDSEWCAKQNLDTHSLGLQLNSKESERTNSDCTETVDENIMEVFENKVAEKLTEKNACFSEPEKNQNSTGSSGVSVLSEMTNDLVDYNPSILTDTTLLASTTVDDIEELKGKSVAERDLDDSNSVSLPHSCLELRTIDCEGVDSYSVDEFTAKSNGVCNPTQGRRKKNSKTSNNSHDYLFLSRQQIEQETSGTNKPHCHNQSKKREHNNTGTSTLGTLEAVEEVDDCTLVGFLQKRLKRTMTHNETVDCSSSTPLEVDNEPTIASFLYKLKRKKHQRPSGGELN 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23260696 23276147 - PI0009023.1 Cmetu06g1582 359244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1582 996 ProSiteProfiles Myb-like domain profile. 420 471 IPR001005 -
Cmetu06g1582 996 ProSiteProfiles Myb-like domain profile. 526 576 IPR001005 -
Cmetu06g1582 996 Pfam Myb-like DNA-binding domain 372 417 IPR001005 -
Cmetu06g1582 996 Pfam Myb-like DNA-binding domain 532 575 IPR001005 -
Cmetu06g1582 996 SUPERFAMILY Homeodomain-like 348 416 IPR009057 -
Cmetu06g1582 996 MobiDBLite consensus disorder prediction 606 707 - -
Cmetu06g1582 996 MobiDBLite consensus disorder prediction 664 687 - -
Cmetu06g1582 996 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 16 966 - -
Cmetu06g1582 996 Gene3D - 369 420 - -
Cmetu06g1582 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 367 419 IPR017930 -
Cmetu06g1582 996 ProSiteProfiles Myb-like domain profile. 367 419 IPR001005 -
Cmetu06g1582 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 420 475 IPR017930 -
Cmetu06g1582 996 CDD SANT 533 576 IPR001005 -
Cmetu06g1582 996 SMART sant 530 578 IPR001005 -
Cmetu06g1582 996 SMART sant 271 368 IPR001005 -
Cmetu06g1582 996 SMART sant 424 473 IPR001005 -
Cmetu06g1582 996 SMART sant 371 421 IPR001005 -
Cmetu06g1582 996 CDD SANT 427 471 IPR001005 -
Cmetu06g1582 996 Gene3D - 533 579 - -
Cmetu06g1582 996 Pfam Myb-like DNA-binding domain 428 489 - -
Cmetu06g1582 996 SUPERFAMILY Homeodomain-like 521 576 IPR009057 -
Cmetu06g1582 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 526 580 IPR017930 -
Cmetu06g1582 996 MobiDBLite consensus disorder prediction 901 928 - -
Cmetu06g1582 996 MobiDBLite consensus disorder prediction 865 889 - -
Cmetu06g1582 996 Gene3D - 424 474 - -
Cmetu06g1582 996 SUPERFAMILY Homeodomain-like 404 476 IPR009057 -
Cmetu06g1582 996 MobiDBLite consensus disorder prediction 640 663 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1582 K09422 - - csv:101216287 1765.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1582 Cmetu-Chr6:23260696 Cmetu06g2619 Cmetu-Chr6:26328541 7.80E-07 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1658 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1216.1
Cmetu01g2255 . 1 691 MYB-Related Transcription Factor Family AT1G09770 60.5 3.9e-249 858.2
Cmetu06g1582 . 155 608 MYB-Related Transcription Factor Family AT3G18100 54.8 3.8e-138 489.2
Cmetu06g1582 . 155 608 MYB-Related Transcription Factor Family AT3G18100 54.8 3.8e-138 489.2
Cmetu02g1658 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1216.1
Cmetu01g2255 . 1 691 MYB-Related Transcription Factor Family AT1G09770 60.5 3.9e-249 858.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8093 PF13921 Myb_DNA-bind_6 4.60E-11 CL0123 Cmetu TF