Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1585 ATGGTTTCCAGTAATCGAGCAACTCATTCGCATCAACAACAAGCACAGTCTTCGAACACGAATACGAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTACACAGTTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGTCATATCCAGCCCTTTGGATGTATGATAGCTATAGAAGAGGCTAGTTTTCGAGTTATTGCATACAGTGAAAACGCTAGGGAATTGCTCGGTCTAACGCCTCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTTACAATTGGGACTGATGTACGCAACTTGTTCACTTCCAATAGTGCAATTCTGCTAGAGAAGGCGTTTGGGGCTCGAGAAATCACTTTGTTGAACCCAGTTTGGATTCATTCCAAGAATTCTGGAAAGCCTTTTTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGAGCAGTACAATCGCAGAAGCTTGCAGTGCGTGCAATTTCTCAGTTACAAGCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGAGTTATGGTGTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTAGCTGAAAGTAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAATCGCGTTAGGATGATTGTTGATTGCCATGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCTCCCCATGGCTGCCATGCCCAGTATATGGCCAATATGGGCTCCATTGCTTCGTTAGCAATGGCAGTTGTTATCAATGGTAATGATGATGAAGCTATAGGTGGACGAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGTCATCATACTTCTGCTCGGTGTATTCCGTTCCCACTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCTTCGCAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACGCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTATCCTCTGGGTGTGACGCCAACTGAGGTCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATAAAATGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGATGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCTCGTAGTTTACCATGGGAGAATGCAGAGATGGATGCAATTCACTCATTGCAGCTTATTCTACGAGATTCATTTAAGGATGATGTGGCAATCAATTCAAAGGCAGTCGTGCACCCTCATCTAGGGGATCTTGACTTGCAGGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTTGAGGAGGCTATGGGGAAATCCTTAGTTCGTGATCTTGTGTACAAAGAGTCTGAAGAAACAGTTGACGGACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGATAAAAATGTAGAGATAAAAATGAGGACATTTGGGCCTGAAGAAGATCAAAGGACCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTGAGCATACAAGGTGATTATAAGGCAATTATTCATAGCCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGGGAGGACATAATTGGAAAAATGCTAGTAGGAGAGGTTTTCGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACAGTGCAATTGGAGGGCAGGACAATGAAAAATACCCCTTTTCTTTTTATGATAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAACATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCAAGTCCTGAATTGCAACAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACAGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTGTTGCTTGTGAAAAACAAATGCTAAAGATTATTGAGGATATGGACTTGGAATGTATTGATGATGGTACGATGGAGCTTGAGAAGGGAGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAACTTACAACTGATTCGTGATATACCAGAAGAAGTTAAGACCATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCCGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCGGAAGGCTGGGTAGAAATACGTGTCTGTCCATTACTGAAGCAAAACTCAGATGGAATTACTGTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTACAATACATCAGAGAGTCTGAAAGATGCTATTTCTTGATTACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAATGATGTCGGTTAG 3330 43.48 MVSSNRATHSHQQQAQSSNTNTSNLRSHRTDSISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEVQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDADFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDDVAINSKAVVHPHLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDGLVSRALKGEEDKNVEIKMRTFGPEEDQRTRDYTDNIVGVCFVGQDVTCQKVFMDKFVSIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPLLKQNSDGITVAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVG 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5450876 5456049 + PI0026962.1 Cmetu06g1585 359247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1585 1109 CDD HisKA 875 931 IPR003661 GO:0000155|GO:0007165
Cmetu06g1585 1109 PANTHER TWO-COMPONENT HISTIDINE KINASE 829 1092 - -
Cmetu06g1585 1109 FunFam Phytochrome 856 937 - -
Cmetu06g1585 1109 Gene3D - 856 937 - -
Cmetu06g1585 1109 SMART gaf_1 229 417 IPR003018 GO:0005515
Cmetu06g1585 1109 Pfam Phytochrome region 420 581 IPR013515 GO:0006355|GO:0009584
Cmetu06g1585 1109 Gene3D - 938 1104 IPR036890 -
Cmetu06g1585 1109 Pfam PAS fold 80 196 IPR013654 GO:0006355
Cmetu06g1585 1109 MobiDBLite consensus disorder prediction 1 29 - -
Cmetu06g1585 1109 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Cmetu06g1585 1109 ProSiteProfiles Histidine kinase domain profile. 882 1102 IPR005467 -
Cmetu06g1585 1109 CDD HATPase_Phy-like 986 1098 IPR044767 -
Cmetu06g1585 1109 SUPERFAMILY PYP-like sensor domain (PAS domain) 748 852 IPR035965 -
Cmetu06g1585 1109 Gene3D - 412 573 IPR043150 -
Cmetu06g1585 1109 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 987 1099 IPR003594 -
Cmetu06g1585 1109 SUPERFAMILY PYP-like sensor domain (PAS domain) 615 694 IPR035965 -
Cmetu06g1585 1109 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 863 931 IPR036097 GO:0000155|GO:0007165
Cmetu06g1585 1109 Gene3D PAS domain 608 722 - -
Cmetu06g1585 1109 Gene3D PAS domain 84 332 - -
Cmetu06g1585 1109 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 950 1099 IPR036890 -
Cmetu06g1585 1109 Pfam PAS fold 613 718 IPR013767 GO:0006355
Cmetu06g1585 1109 Pfam PAS fold 734 853 IPR013767 GO:0006355
Cmetu06g1585 1109 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Cmetu06g1585 1109 CDD PAS 745 853 IPR000014 -
Cmetu06g1585 1109 SMART pas_2 733 803 IPR000014 -
Cmetu06g1585 1109 SMART pas_2 612 679 IPR000014 -
Cmetu06g1585 1109 ProSiteProfiles PAS repeat profile. 734 786 IPR000014 -
Cmetu06g1585 1109 Pfam GAF domain 229 407 IPR003018 GO:0005515
Cmetu06g1585 1109 PRINTS Phytochrome signature 543 561 IPR001294 GO:0006355|GO:0009584
Cmetu06g1585 1109 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Cmetu06g1585 1109 PRINTS Phytochrome signature 510 529 IPR001294 GO:0006355|GO:0009584
Cmetu06g1585 1109 PRINTS Phytochrome signature 632 647 IPR001294 GO:0006355|GO:0009584
Cmetu06g1585 1109 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Cmetu06g1585 1109 PRINTS Phytochrome signature 716 736 IPR001294 GO:0006355|GO:0009584
Cmetu06g1585 1109 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Cmetu06g1585 1109 PRINTS Phytochrome signature 613 629 IPR001294 GO:0006355|GO:0009584
Cmetu06g1585 1109 SMART HisKA_10 875 939 IPR003661 GO:0000155|GO:0007165
Cmetu06g1585 1109 Gene3D - 210 556 IPR029016 -
Cmetu06g1585 1109 Pfam His Kinase A (phospho-acceptor) domain 879 939 IPR003661 GO:0000155|GO:0007165
Cmetu06g1585 1109 FunFam Phytochrome 747 855 - -
Cmetu06g1585 1109 SUPERFAMILY GAF domain-like 415 580 - -
Cmetu06g1585 1109 CDD PAS 621 692 IPR000014 -
Cmetu06g1585 1109 SMART HKATPase_4 987 1102 IPR003594 -
Cmetu06g1585 1109 NCBIfam PAS domain S-box protein 617 686 IPR000014 -
Cmetu06g1585 1109 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Cmetu06g1585 1109 ProSiteProfiles PAS repeat profile. 610 681 IPR000014 -
Cmetu06g1585 1109 FunFam Phytochrome 412 530 - -
Cmetu06g1585 1109 FunFam Phytochrome 938 1104 - -
Cmetu06g1585 1109 SUPERFAMILY GAF domain-like 209 404 - -
Cmetu06g1585 1109 Gene3D PAS domain 747 855 - -
Cmetu06g1585 1109 FunFam Phytochrome 606 728 - -
Cmetu06g1585 1109 PIRSF Phytochrome_conventional 12 1107 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1585 K12121 - - csv:101212197 2175.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1663 Cmetu-Chr1:4007171 Cmetu06g1585 Cmetu-Chr6:5450876 0.00E+00 dispersed
Cmetu03g0436 Cmetu-Chr3:6684261 Cmetu06g1585 Cmetu-Chr6:5450876 0.00E+00 dispersed
Cmetu03g2257 Cmetu-Chr3:6713839 Cmetu06g1585 Cmetu-Chr6:5450876 0.00E+00 dispersed
Cmetu06g1585 Cmetu-Chr6:5450876 Cmetu12g0178 Cmetu-Chr12:6008683 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0019 . 5 1168 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1410.6
Cmetu09g0510 . 103 1066 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1330.5
Cmetu10g1485 . 4 847 Histidine Kinase Gene Family AT2G01830 71.1 0.0e+00 1135.6
Cmetu11g2204 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.4e-269 926.4
Cmetu11g0071 . 1 936 Histidine Kinase Gene Family AT2G01830 50.9 1.5e-258 889.8
Cmetu07g2088 . 1 898 Histidine Kinase Gene Family AT5G10720 56.5 2.0e-251 865.9
Cmetu03g2257 . 1 1078 Histidine Kinase Gene Family AT1G09570 76.2 0.0e+00 1718.7
Cmetu03g0436 . 3 1146 Histidine Kinase Gene Family AT1G09570 71.4 0.0e+00 1631.3
Cmetu01g1663 . 17 1109 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1214.5
Cmetu06g1585 . 34 1098 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1156.4
Cmetu06g1585 . 13 1039 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1620.9
Cmetu12g0178 . 32 1054 Histidine Kinase Gene Family AT2G18790 59.9 0.0e+00 1241.5
Cmetu01g1663 . 25 1066 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Cmetu03g0436 . 22 1077 Histidine Kinase Gene Family AT2G18790 51.0 3.8e-308 1054.7
Cmetu03g2257 . 21 1012 Histidine Kinase Gene Family AT2G18790 50.2 5.1e-289 991.1
Cmetu01g1663 . 17 1113 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1382.9
Cmetu06g1585 . 21 1100 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1111.3
Cmetu06g1585 . 3 1100 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1664.8
Cmetu12g0178 . 39 1116 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1283.5
Cmetu01g1663 . 25 1112 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Cmetu03g2257 . 8 1073 Histidine Kinase Gene Family AT4G16250 50.1 8.1e-306 1047.0
Cmetu12g0178 . 16 1117 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1383.6
Cmetu06g1585 . 38 1098 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1238.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42