Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1598 ATGGAAAATATGCAGTATGCTGAGGAGCTCGTGAGGGAGTTCCTTGTCTTTAGGGGGTTTACTAGTGCTCTTCAATCTTATGAGAGTGAGCTTAGCACAGATATTGGAAAAGGGTTCCAAGTGGACAAGATTTTAGATTTAATCTTTTCAGTTTATATACCCAAATTTGAGGCAGAAAAGTTGGTGGGGCTAGTTGGTTTTTTCAAGCAGTGCCTTGCTTCATCATCTGACAATACACTCCTTTCAACTGTGTCAAAATTGGAGGTTTCCATCCTTCGTTATTATATGGTACATGCCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTTCTTAAAATACATGGCAATGATCTACTGCAGAGGACTAAAGATTGGACTCCATGGTTTGCCCTACCATACCTAAAGAATCCAAAGTTTGATCCCAATTTTCGCGTTTATTTTACAAAGGAGTGGTATGAAGCGCTGCATGTTTCTGTAAGGAATTTCTTCAGTGAAGTCTTCAATGGCACTCATATCCTGCATATAATTTCAGAAAAATTTTTCTTAACAAAACCACGCATTCCTGCCCTGCTAAAGCTCAGTTCAGAGAAGAATACAGTTAATCATCTGAAAAGAGATATCAAGCAGTTAAACCTTAAATTAGCTCAACTTCAGGCTTTATTGGAGGAAAAGGAAGCTCATCTTTGTAACTTAAGAAGCTTGGTGAACAGTTCTTCAAGTGTGATGCATGAAGAGAATGCCACTTCATCAAATGATGCTCAGGAGACTTGTCCCCCTCCAACTACACAAGTTGGGGAAACACAACTGGCTCGAGATGGGATTTTAGCTGGCTCTGACAAGTATACTGCTTCAAATGAAGATTCAAGTTCTTTATTAACTAGTTGCTCGGGAGACGGTGAAGTTGGTGATTCTAGTCATAGTTGTGAAGATGGTCGCCAAATGGTGAATAGCGGAGAGGTCCATGTACAAGAAGACTTTCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGCCGTTGCCGTTTTTCTGCATCTGGAAACAATGTAGCAAGTGCTTCTTTGGATGGTACAGTCAGGATATGGACATATGATTCATCCACTCCAGCATCTAGAAATGCAACAATTTACTGTGGGGCAGAGATTATGTCACTTGATTGGGAGTGTAAATCTGATCGCCTACTTCTAATAGGCACTGCTGATGCGGGCATTAAAGCATGGAATGTTGATGCAAAGAGAGTTGTGTGTGATCTCAACACGACTGATATGTTCCCTAGCGTGTTGGATATCAAATGCAGTCCTGTTGAATCTATTTTCGTCTCTGCAGCAGCATCTAGAGGGCATGGTACAAGTTATGTGGATAGTTTGGGGTTTGCTTCACTCACAGTATGGAATATGAGAACTTGGAAGTCAATGACAGTCCTTCCTCTGGGTAAGGATCCTCCTGCAATCACTTCAATGTGCTTCAATCATAACGGGAAGATCTTAGCAGCTGCTGCTACTGATGGAATGATTCACATGTTTGACATGTCTGCCTGTCTACAAATTACAGGGTGGCCGGCTCATGATTCTGCCATTAACTCGATTCTTTTTGGGCCAGATGAAACTAGCATTTTTACCTTAGGGTCAGATGGGAAGATATTTGAATGGAGCTTGCATAATCAAGGTCAAGTTCTGTGGTCAAGAAATAATAGCAGGTTTTGCGATTCCGAGAGCCCTCTATCTCTGAGACATGAAATGGCTTTGGATGCAAATGGAAAAAGACTCTTGGCTACATCAAATTCAGTGAGAGCTCCCATATACCAGGTGGGTGGTCGTGTGGGTGGATTGAAAACTCTTCCACATACGGCAGCGATAACGACGGTTGATTGGCACCCAACTTTGCCTGTTTTCTTGACTGGATCTGCCGACCACTCAATTCGAGTTACATCTATTTCGTGA 1962 41.9 MENMQYAEELVREFLVFRGFTSALQSYESELSTDIGKGFQVDKILDLIFSVYIPKFEAEKLVGLVGFFKQCLASSSDNTLLSTVSKLEVSILRYYMVHAIQSGRTDKVLEFLKIHGNDLLQRTKDWTPWFALPYLKNPKFDPNFRVYFTKEWYEALHVSVRNFFSEVFNGTHILHIISEKFFLTKPRIPALLKLSSEKNTVNHLKRDIKQLNLKLAQLQALLEEKEAHLCNLRSLVNSSSSVMHEENATSSNDAQETCPPPTTQVGETQLARDGILAGSDKYTASNEDSSSLLTSCSGDGEVGDSSHSCEDGRQMVNSGEVHVQEDFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSSTPASRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPSVLDIKCSPVESIFVSAAASRGHGTSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTLGSDGKIFEWSLHNQGQVLWSRNNSRFCDSESPLSLRHEMALDANGKRLLATSNSVRAPIYQVGGRVGGLKTLPHTAAITTVDWHPTLPVFLTGSADHSIRVTSIS 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7677506 7685147 + PI0016860.1 Cmetu06g1598 359260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1598 653 Pfam WD domain, G-beta repeat 336 369 IPR001680 GO:0005515
Cmetu06g1598 653 Pfam WD domain, G-beta repeat 619 649 IPR001680 GO:0005515
Cmetu06g1598 653 Pfam WD domain, G-beta repeat 488 516 IPR001680 GO:0005515
Cmetu06g1598 653 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 559 IPR001680 GO:0005515
Cmetu06g1598 653 ProSiteProfiles Trp-Asp (WD) repeats profile. 619 653 IPR001680 GO:0005515
Cmetu06g1598 653 SUPERFAMILY WD40 repeat-like 330 649 IPR036322 GO:0005515
Cmetu06g1598 653 MobiDBLite consensus disorder prediction 280 313 - -
Cmetu06g1598 653 Coils Coil 194 228 - -
Cmetu06g1598 653 SMART WD40_4 376 415 IPR001680 GO:0005515
Cmetu06g1598 653 SMART WD40_4 613 651 IPR001680 GO:0005515
Cmetu06g1598 653 SMART WD40_4 475 516 IPR001680 GO:0005515
Cmetu06g1598 653 SMART WD40_4 517 558 IPR001680 GO:0005515
Cmetu06g1598 653 SMART WD40_4 331 370 IPR001680 GO:0005515
Cmetu06g1598 653 Gene3D - 456 653 IPR015943 GO:0005515
Cmetu06g1598 653 MobiDBLite consensus disorder prediction 282 302 - -
Cmetu06g1598 653 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 619 653 - -
Cmetu06g1598 653 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 379 IPR001680 GO:0005515
Cmetu06g1598 653 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 373 - -
Cmetu06g1598 653 Gene3D - 195 455 IPR015943 GO:0005515
Cmetu06g1598 653 PANTHER OS05G0299300 PROTEIN 1 652 - -
Cmetu06g1598 653 MobiDBLite consensus disorder prediction 241 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1598 K24760 - - csv:101209643 1216.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32