Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1618 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTCGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTTACTACTGATGTCGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACATGGGAAGTTAACTTACCTGTGGAGGAGGTGCCTCCTGAGCTCCCAGAACCAGCATTAGGGATAAATTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGTTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAACAGTCTGCCACTCATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 768 47.79 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23100182 23108294 + PI0024475.1 Cmetu06g1618 359280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1618 255 MobiDBLite consensus disorder prediction 183 200 - -
Cmetu06g1618 255 MobiDBLite consensus disorder prediction 141 201 - -
Cmetu06g1618 255 Pfam PHD-finger 202 251 IPR019787 -
Cmetu06g1618 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Cmetu06g1618 255 MobiDBLite consensus disorder prediction 141 162 - -
Cmetu06g1618 255 FunFam PHD finger alfin-like protein 194 250 - -
Cmetu06g1618 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Cmetu06g1618 255 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0006355|GO:0042393
Cmetu06g1618 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cmetu06g1618 255 CDD PHD_AL_plant 202 251 IPR044104 -
Cmetu06g1618 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Cmetu06g1618 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Cmetu06g1618 255 MobiDBLite consensus disorder prediction 163 182 - -
Cmetu06g1618 255 SMART PHD_3 201 249 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1618 K26274 - - csv:101212601 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1113 Cmetu-Chr3:5955000 Cmetu06g1618 Cmetu-Chr6:23100182 2.70E-97 dispersed
Cmetu06g1618 Cmetu-Chr6:23100182 Cmetu10g1328 Cmetu-Chr10:14679758 9.40E-74 dispersed
Cmetu06g1618 Cmetu-Chr6:23100182 Cmetu08g0029 Cmetu-Chr8:22903165 4.40E-79 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1618 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 2.1e-113 405.6
Cmetu03g1113 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.3e-96 349.0
Cmetu01g2478 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 1.2e-92 336.7
Cmetu08g0029 . 3 237 Alfin-like Transcription Factor Family AT1G14510 59.2 2.1e-78 289.3
Cmetu10g1328 . 8 240 Alfin-like Transcription Factor Family AT1G14510 57.3 2.3e-72 269.2
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.6e-108 388.7
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT5G26210 63.7 1.4e-96 349.7
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 8.2e-94 340.5
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT5G26210 61.9 1.5e-79 293.1
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.1 2.0e-79 292.7
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 5.2e-101 364.4
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 8.6e-96 347.1
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.4e-90 328.9
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.3 9.5e-79 290.4
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT3G42790 63.1 3.6e-78 288.5
Cmetu08g0029 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.1 2.1e-107 385.6
Cmetu10g1328 . 1 242 Alfin-like Transcription Factor Family AT5G05610 70.2 4.2e-100 361.3
Cmetu03g1113 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 2.1e-91 332.4
Cmetu01g2478 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 1.8e-90 329.3
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.2e-83 306.6
Cmetu08g0029 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.2 9.5e-89 323.6
Cmetu10g1328 . 43 242 Alfin-like Transcription Factor Family AT3G11200 70.8 7.3e-81 297.4
Cmetu03g1113 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 2.1e-75 279.3
Cmetu01g2478 . 44 250 Alfin-like Transcription Factor Family AT3G11200 66.2 3.5e-75 278.5
Cmetu06g1618 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.9e-69 258.8
Cmetu06g1618 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.6e-76 283.1
Cmetu03g1113 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.7e-65 245.0
Cmetu01g2478 . 10 160 Alfin-like Transcription Factor Family AT2G02470 76.8 5.7e-63 238.0
Cmetu08g0029 . 3 135 Alfin-like Transcription Factor Family AT2G02470 72.6 6.4e-54 208.0
Cmetu10g1328 . 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 9.2e-53 204.1
Cmetu03g1113 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 7.0e-74 273.9
Cmetu01g2478 . 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 5.2e-69 257.7
Cmetu06g1618 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 8.3e-67 250.4
Cmetu08g0029 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 4.4e-52 201.4
Cmetu10g1328 . 7 136 Alfin-like Transcription Factor Family AT5G20510 68.9 1.3e-51 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8097 PF12165 Alfin 2.40E-68 No_clan Cmetu TF