Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1713 ATGTTCCTTATAACGTCGTTGGTTCGATGTGGTTCAATAGGGACAAGGAAGACTAACCCCATTGAAGGTTTTATGACTAATATGGCTCTTCGAAAGTTTGTTTGTGGTTCTACACCTTCAATTAACCTGAAACATTCAAGTTTTCCCATTAAGTTGCACGAACAAACTCGATTTGAAGAACCTGAGACTAATCAGACGTTGGAGCCTGATGTAGAAATTGACCCCAGAGAAGTATATTTTCTTATTATGCACTTTCTTTCATCTGGGCCATGTCTTAGGACTTGTGGGCTACTATGGGATGAGCTTTTTGAACACCAGCTTTTGCCCCGACGATATCATGCATGGTATTCAAGAAATGGGGTGCATAGTGGCCATGAAAATGACGATGGCTTGTCATTTCCATTAAGTTACCAACACTTAGTGGAGAGGTATCCCCATGTCGATAAGAATCACCTGATAAAACTTTTGAAGCAATTGATACTTAACAAGGCCCCTCCATCTAGAGGTATGAGTGGTGGAATTGCTCCAAATGCTGCTGATGTGCCTACATTATTGGGAACGGGCACATTTTCACTTTTGAGCTATGATAAACATGAAGGAGTTGGCAAACCAAGTGGTCCCCCAGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCGCCTTCTGTACGTGCAGCATGTTATGCAATTGCTAAGCCATCGACAATGGTTCAGAAAATGCAAAACATAAAGAGGCTACGAGGGCATAGGAATGCTGTCTATTGTGCAATTTTTGATCGCATGGGAAGGTACGTTATAACTGGGTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCAGAGGACATGAGGGTGATATCACTGACCTTGCCGTTAGTTCTAACAATGCTGTGGTGGCATCATCTTCAAATGATTTTGTTATCCGTGTTTGGCGTTTGCCTGATGGGCTACCGATTTCAGTCTTACGAGGACATACTGGTGCTGTTACTGCAATTGCCTTTAGTCCTAGAGCTGCATATCAGCTTCTTTCATCGTCAGATGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCTCAGAGTGCTCCTCGGATTTATGTTCCAAAACCTTTGGACTCAGTGACTGCAAGAAATGGTGGCTCTTCTGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGCTGTGCATTTAATGCATGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTCTAGCAAGGGTTTGGAGTGCCTGTAAAGGAAACAATGATAACCCAGACCAACCAAATCATGAGATTGATGTGTTAGCTGGCCACGAGAATGATGTCAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCAAGATTTACAACTACCGACGTTGTGAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTTACTTATGACAATATAGTTACTTGTTCTCGTGATGGAAGTGCAATTATTTGGGTCCCAAGATCACGGAGGTCACATGGGAAGGTTGGTCGCTGGACCCGTGCATACCATTTAAAAGTGCCACCTCCACCCATGCCCCCGCAACCTGCCCGAGGTGGCCCTCGCCAGCGGATTCTTCCTACCCCTCGTGGTGTAAATATGATAATTTGGAGCCTAGATAACCGCTTTGTCCTAGCAGCTATAATGGAGACACTATGTGATGCAATTCAAAGCAAGAACGGGTGGATGGAGGAATCAATGATCGGAGTATTTTTTGTGAAGAATAGGAATTTCCAACAGATGTTTGGGCTTTTGGAACAATCATTGAAATGGCTACTGGCTATTCAATGGGAAGATTTGGAGACATCATTGAAGGCGACCCAGCAAGCTTCTTTGGCGGATTCTCTGACTGAAGGAGGAGGTGAGGCAAGGCATGGGTGA 1989 43.89 MFLITSLVRCGSIGTRKTNPIEGFMTNMALRKFVCGSTPSINLKHSSFPIKLHEQTRFEEPETNQTLEPDVEIDPREVYFLIMHFLSSGPCLRTCGLLWDELFEHQLLPRRYHAWYSRNGVHSGHENDDGLSFPLSYQHLVERYPHVDKNHLIKLLKQLILNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVGKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQSAPRIYVPKPLDSVTARNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDVVKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMETLCDAIQSKNGWMEESMIGVFFVKNRNFQQMFGLLEQSLKWLLAIQWEDLETSLKATQQASLADSLTEGGGEARHG 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5378479 5394382 - PI0012578.1 Cmetu06g1713 359375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1713 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 391 IPR001680 GO:0005515
Cmetu06g1713 662 FunFam Bromodomain and WD repeat domain-containing protein 410 548 - -
Cmetu06g1713 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 385 - -
Cmetu06g1713 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 307 340 - -
Cmetu06g1713 662 Gene3D - 243 415 IPR015943 GO:0005515
Cmetu06g1713 662 PRINTS G protein beta WD-40 repeat signature 284 298 IPR020472 -
Cmetu06g1713 662 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Cmetu06g1713 662 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Cmetu06g1713 662 CDD WD40 256 483 - -
Cmetu06g1713 662 Gene3D - 416 581 IPR015943 GO:0005515
Cmetu06g1713 662 PANTHER WD REPEAT DOMAIN 9 67 589 - -
Cmetu06g1713 662 SMART WD40_4 407 445 IPR001680 GO:0005515
Cmetu06g1713 662 SMART WD40_4 342 382 IPR001680 GO:0005515
Cmetu06g1713 662 SMART WD40_4 457 522 IPR001680 GO:0005515
Cmetu06g1713 662 SMART WD40_4 258 297 IPR001680 GO:0005515
Cmetu06g1713 662 SMART WD40_4 300 339 IPR001680 GO:0005515
Cmetu06g1713 662 ProSitePatterns Trp-Asp (WD) repeats signature. 369 383 IPR019775 -
Cmetu06g1713 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 300 - -
Cmetu06g1713 662 SUPERFAMILY WD40 repeat-like 255 525 IPR036322 GO:0005515
Cmetu06g1713 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Cmetu06g1713 662 FunFam PH-interacting protein isoform X1 240 408 - -
Cmetu06g1713 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Cmetu06g1713 662 Pfam WD domain, G-beta repeat 345 382 IPR001680 GO:0005515
Cmetu06g1713 662 Pfam WD domain, G-beta repeat 260 297 IPR001680 GO:0005515
Cmetu06g1713 662 Pfam WD domain, G-beta repeat 303 338 IPR001680 GO:0005515
Cmetu06g1713 662 Pfam WD domain, G-beta repeat 417 445 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1713 K11797 - - csv:101214610 1108.98
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015992 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 0 1 1 0 9