Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1760 ATGGTTGATACTTTTGCTGATCTCTTCCAACAAAATGATGAATTTGGAGACGATCTCTTTAGCATCTTCGAGAGTTTGGAGAATGTTGCTGAGTTCACAATGATCGAAGATGATATTGAGCCTGTTAAAGATGGCGAAGAAACTACGAGCTTGCGGTTGAAGACGATAGCGGCGACGTCTCCTACTGCTGCAATGACGTCAACCGGTCTTTCTTCCTCGGAGGATCCAAACCCTGATGGACCTCAAAGAATGTCGCATATTACGGTGGAACGTAACCGTAGGAAGCAAATGAACGAACACTTGACTGTCTTGAGATCACTCATGCCTTGCTTCTATGTCAAGAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAAGAGCTGCAACAAGTTCTTCAATCATTAGAAGCCAAAAAGCAAAGGAAAGTTGTTTATAGTGAAGTATTGAGCCCTAGGGTTAAAACCACCACTAAGCCTCGCCTTAACTTGCCAATCAGTCCAAGAACTCCACAACCCACTAGCCCTTATAGCAAGCCTCCTCCAAGGTTGCAACAACCTCCCTCAGCCGCCACCGGTGGTGGTGCCTATAATATCCCTTCAAGCAGCTCTAGTACCACCAATATGGCTAATAACAACTCATTAGAGCCATCTCCTTGTAATTCATGTTCAACCACAAATTCCTCAATTGACAATAACAACAATAATAATAACAATAGTAATAGTAACAACAATAATGATCTTGTGGCAAATTCAAAATCAGCCATAGCTGAAGTTGAGGTGAAGTTTACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCTCCAATCCCTGGTCAAGCTTACAAGATTATTTCTGCACTTGAACAACTCTCCCTTGAAATTCTCCACGTCAAGATCACCACCCTTGATGAAACCATGTTTAACTCCTTCACAATTAAGATTGGAATTGAATGCCAACTTAGTGCTGAGGAATTGGCTCAACAAATTCAGCAAACATTCTGCTAA 1017 41.99 MVDTFADLFQQNDEFGDDLFSIFESLENVAEFTMIEDDIEPVKDGEETTSLRLKTIAATSPTAAMTSTGLSSSEDPNPDGPQRMSHITVERNRRKQMNEHLTVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVVYSEVLSPRVKTTTKPRLNLPISPRTPQPTSPYSKPPPRLQQPPSAATGGGAYNIPSSSSSTTNMANNNSLEPSPCNSCSTTNSSIDNNNNNNNNSNSNNNNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQAYKIISALEQLSLEILHVKITTLDETMFNSFTIKIGIECQLSAEELAQQIQQTFC 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7859886 7862109 + PI0010009.1 Cmetu06g1760 359422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1760 338 FunFam Transcription factor SPEECHLESS 73 147 - -
Cmetu06g1760 338 Coils Coil 125 145 - -
Cmetu06g1760 338 Gene3D - 75 146 IPR036638 GO:0046983
Cmetu06g1760 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Cmetu06g1760 338 PANTHER TRANSCRIPTION FACTOR FAMA 7 337 IPR044283 GO:0003700|GO:0010052
Cmetu06g1760 338 MobiDBLite consensus disorder prediction 62 79 - -
Cmetu06g1760 338 SMART finulus 87 138 IPR011598 GO:0046983
Cmetu06g1760 338 MobiDBLite consensus disorder prediction 169 190 - -
Cmetu06g1760 338 CDD bHLH_AtFAMA_like 84 157 - -
Cmetu06g1760 338 Pfam Helix-loop-helix DNA-binding domain 82 133 IPR011598 GO:0046983
Cmetu06g1760 338 MobiDBLite consensus disorder prediction 62 82 - -
Cmetu06g1760 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 153 IPR036638 GO:0046983
Cmetu06g1760 338 MobiDBLite consensus disorder prediction 194 249 - -
Cmetu06g1760 338 MobiDBLite consensus disorder prediction 156 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1760 K20558 - - csv:101211617 541.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1529 Cmetu-Chr6:4377082 Cmetu06g1760 Cmetu-Chr6:7859886 1.80E-37 dispersed
Cmetu06g1760 Cmetu-Chr6:7859886 Cmetu06g2249 Cmetu-Chr6:22268 2.20E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g866 . . Bda05g00110 . Bpe03g00175 . Bma10g01285 . . Cmo18g01328 . . . . Sed07g0811 . Cpe14g00057 Bhi01g01450 Tan01g0149 Cmetu06g1760 . . Mch10g0088 . . . . . . . . Cone1ag0958 Cone5ag0651 Cone14ag0031 . . . . . Blo07g00350 Blo09g00040 . Bda15g00775 . Bpe12g00372 . . . . . Cma16g00072 Cma18g01299 Car16g00063 Car18g01215 Cpe09g00043 . . . . . . . . . . . . . . . . Csa03g02197 Chy06g01256 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008152 1 1 1 1 1 1 2 1 1 1 0 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8106 PF00010 HLH 8.70E-12 No_clan Cmetu TF