Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1790 ATGGCGACGCTCGAATCCGCAATTCCAATAATCTCTCCATACATTTCTTCTTCTTCTTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCCTCCCCCCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTATCTCTTTCAATTCATCGCGAAATCGCGGCGGCGGAGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCAGAGGAAAATCAGGATGTGAATCAGAAGAAAAAATTATATATCTTCAATTTACCTTGGTCTTTATCTGTTGTTGACATTAAGGAGCTTTTTGGACAATGCGGCACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGAAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCACCAAAGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTCAGGGACTTCTTTTCTGAAAACTTTAACCCAATTGCAGCAAGGGTTGTCTTCGATAGTCCCTCTGGAAGATCTGCTGGTTATGGTTTTGTTTCTTTTGCTACTCTAGAGGAAGCTCAAACTGCACTTTCTTCTTTGGAGGGCAAGGAATTGATGGGAAGACCTCTTCGCCTGAAATTCAGTGAAAGAAATGTCAATGAATCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG 858 42.07 MATLESAIPIISPYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPISFNSSRNRGGGGRLCSAVQEVSLEEASEENQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGRSAGYGFVSFATLEEAQTALSSLEGKELMGRPLRLKFSERNVNESETPKEDIVESQPEES 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29787422 29789907 + PI0005419.1 Cmetu06g1790 359452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1790 285 CDD RRM_SF 93 164 - -
Cmetu06g1790 285 SUPERFAMILY RNA-binding domain, RBD 83 172 IPR035979 GO:0003676
Cmetu06g1790 285 SUPERFAMILY RNA-binding domain, RBD 172 267 IPR035979 GO:0003676
Cmetu06g1790 285 MobiDBLite consensus disorder prediction 263 285 - -
Cmetu06g1790 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Cmetu06g1790 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 265 IPR000504 GO:0003723
Cmetu06g1790 285 MobiDBLite consensus disorder prediction 263 279 - -
Cmetu06g1790 285 Gene3D - 172 275 IPR012677 -
Cmetu06g1790 285 Gene3D - 56 171 IPR012677 -
Cmetu06g1790 285 SMART rrm1_1 188 261 IPR000504 GO:0003723
Cmetu06g1790 285 SMART rrm1_1 92 164 IPR000504 GO:0003723
Cmetu06g1790 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 162 IPR000504 GO:0003723
Cmetu06g1790 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 259 IPR000504 GO:0003723
Cmetu06g1790 285 PANTHER OS02G0815200 PROTEIN 55 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0336 Cmetu-Chr6:3074447 Cmetu06g1790 Cmetu-Chr6:29787422 1.20E-26 dispersed
Cmetu06g1790 Cmetu-Chr6:29787422 Cmetu11g1559 Cmetu-Chr11:21733540 1.60E-13 dispersed
Cmetu06g1790 Cmetu-Chr6:29787422 Cmetu01g0191 Cmetu-Chr1:26366292 9.30E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g678 . . . . . . . . . Cmo16g01221 . . . . Sed02g0123 Cpe14g00970 . Bhi11g00026 Tan01g2201 Cmetu06g1790 . . Mch10g1673 . Cla10g00148 Cam10g0144 Cec10g0153 Cco10g0153 Clacu10g0147 Cmu10g0994 Cre10g0405 . . . . Lsi07g01183 . . Cme06g02461 Blo03g00866 . . . Bpe08g00829 . . . . . . . Cma16g01171 . Car16g01104 . . . . . . . . . . . . . . . . . Csa03g00157 Chy06g02152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012628 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29