Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1845 ATGGCTGAACCTATATACACCGTAGCTTCTGATAGTGAAACCACTGGGGAAGATAGAACAACATCAACTTTTCCAGAAATTGCAGTTGGAATTGATATTGGTACTTCACAATGTAGTATTGCAGTCTGGAATGGATCTCAGATAGAGCTTCTTAAGAACACAAGAAATCAAAAAATCATGAGATCATATGTCACCTTCAAGGATGACACTCCTTCCGGGGGAGTTAGTAATGAGCTAAGCCATGAGTATGACATGCTCTCTGGTGCTGCAATTTTCAATATGAAACGCTTGATTGGAAGAGTTGACACTGACCCAGTTGTTCATGCATGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACATTGGTGTTCGTCCATTTGTTGCAGCTTTGGTGAATAATGTATGGAGATCTACAACTCCTGAAGAAGTTTTGGCAATCTTCATCGTTGAACTGAAAATGATGGCTGAATATCAACTAAAACGACCAATTAGAAATGTTGTTTTGACAATTCCGGTTTCATTCAGCCGATTCCAGCTTACTCGTGTGGAACGAGCTTGTGCAATGGCTGGACTTCAAGTTAGATTGATGCCTGAACCAACAGCAGTAGCTTTATTATATGCTCAACAACAACAGCAGGCTGTACATGACAGCATGGGCAGTGGAAGTGAAAAAATTGCTCTTATTTTCAACATGGGAGCTGGGTATTGTGATGTTGCTGTTTCAGCCATAGGAGGAGGGGTGTCACAGATCAGAGCCCTGGCTGGCAGTCCTATAGGAGGCGAAGATCTACTTCAAAACACCATGAAGTATTTTTTGCCAAATTCTGAATCTATATTCTCACACCGTGGAATTGATGAGATCAGAAGGATGGGCTTGCTCCGAGTTGCGACTCAAGATGCTATCCACAAGCTCTCATTCCAGTCTATTGTTGAAATCGATGTCAGCTTGGGAAATGGGTCAAAGTTATGCAAGGTTCTGAGCCGAGAGGAGTTTGAGATGGTGAACAGCAAGGTGTTTGAGAAATGTGAGAACCTCGTTAAGCAATGCTTACATGATGCACGGGTAGGGATCGAAGATTTGACCGATGTAGTAGTAGTTGGTGGATGCTCATACATACCAAAGATCAGAAATCTTCTGATGGAAATAAGTAAAAAGAAGGCACTTTATGAAGGAATAGATCCTTTAGAAGCTGCAGTTTCTGGTGCAGCTTTAGAAGGCGCAATAGCTTCAGGCATTGGCGATCCATTTGGCAGTCTAGATCTTCTTAGCATCCAAGCGACGTCTCTTGCCATTGGAATTCGAGCTGATGGAAACAGTTTCATTCCAATTATCCCCAAGAACACCACAATGCCAGCACGCAAGGAGTTAGTTTTCACAACAGTTCAAGACAATCAAAGTGAGGCCCTGATTGTTGTTTATGAAGGTGAAGAGACAAGAGCAGAGGAAAACCATCTGCTTGGCTATTTCAAAATCATTGGAATTCCACCAGCACCCAAAGGAGTCCCTGAAATCACTATTTGTATGGACATTGACTCTTCAAATATGCTTAGAGTTCTAGCTGGGGCAACACTCCCAGGTGCTCAACACCCTGCAACTCCTTATATGGAAGTCAAGATGCCGACGGTGGATGATGGACATGGCTGGTGTGCAGAAGCTCTGCATGGAAAATATGGTGCCACAATGGAATTGGTTACATTGCGGAAGAAAAGCTAG 1716 43.01 MAEPIYTVASDSETTGEDRTTSTFPEIAVGIDIGTSQCSIAVWNGSQIELLKNTRNQKIMRSYVTFKDDTPSGGVSNELSHEYDMLSGAAIFNMKRLIGRVDTDPVVHACKSLPFLVQTLDIGVRPFVAALVNNVWRSTTPEEVLAIFIVELKMMAEYQLKRPIRNVVLTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAVALLYAQQQQQAVHDSMGSGSEKIALIFNMGAGYCDVAVSAIGGGVSQIRALAGSPIGGEDLLQNTMKYFLPNSESIFSHRGIDEIRRMGLLRVATQDAIHKLSFQSIVEIDVSLGNGSKLCKVLSREEFEMVNSKVFEKCENLVKQCLHDARVGIEDLTDVVVVGGCSYIPKIRNLLMEISKKKALYEGIDPLEAAVSGAALEGAIASGIGDPFGSLDLLSIQATSLAIGIRADGNSFIPIIPKNTTMPARKELVFTTVQDNQSEALIVVYEGEETRAEENHLLGYFKIIGIPPAPKGVPEITICMDIDSSNMLRVLAGATLPGAQHPATPYMEVKMPTVDDGHGWCAEALHGKYGATMELVTLRKKS 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4178107 4181286 - PI0015778.1 Cmetu06g1845 359507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1845 571 PANTHER HEAT SHOCK PROTEIN 70KDA 28 521 IPR013126 GO:0005524|GO:0140662
Cmetu06g1845 571 Gene3D - 29 408 - -
Cmetu06g1845 571 Gene3D - 92 147 - -
Cmetu06g1845 571 SUPERFAMILY Actin-like ATPase domain 27 209 IPR043129 -
Cmetu06g1845 571 CDD HSP70_NBD 29 408 - -
Cmetu06g1845 571 PRINTS 70kDa heat shock protein signature 167 187 - -
Cmetu06g1845 571 PRINTS 70kDa heat shock protein signature 502 518 - -
Cmetu06g1845 571 PRINTS 70kDa heat shock protein signature 27 40 - -
Cmetu06g1845 571 PRINTS 70kDa heat shock protein signature 361 377 - -
Cmetu06g1845 571 PRINTS 70kDa heat shock protein signature 393 413 - -
Cmetu06g1845 571 PRINTS 70kDa heat shock protein signature 55 67 - -
Cmetu06g1845 571 PRINTS 70kDa heat shock protein signature 421 440 - -
Cmetu06g1845 571 PRINTS 70kDa heat shock protein signature 235 245 - -
Cmetu06g1845 571 FunFam Heat shock 70 kDa protein 8 92 147 - -
Cmetu06g1845 571 SUPERFAMILY Actin-like ATPase domain 224 409 IPR043129 -
Cmetu06g1845 571 Pfam Hsp70 protein 28 525 IPR013126 GO:0005524|GO:0140662
Cmetu06g1845 571 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 423 522 IPR029047 -
Cmetu06g1845 571 MobiDBLite consensus disorder prediction 1 21 - -
Cmetu06g1845 571 Gene3D - 212 390 - -
Cmetu06g1845 571 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 419 531 IPR029047 -
Cmetu06g1845 571 FunFam Heat shock 70 kDa protein 8 261 342 - -
Cmetu06g1845 571 FunFam Heat shock 70 kDa protein 8 416 531 - -
Cmetu06g1845 571 Gene3D Actin; Chain A, domain 4 261 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1845 K09489 - - csv:101206971 1093.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1845 Cmetu-Chr6:4178107 Cmetu08g2041 Cmetu-Chr8:16184444 6.50E-75 dispersed
Cmetu06g1845 Cmetu-Chr6:4178107 Cmetu09g1979 Cmetu-Chr9:18238184 7.70E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32